Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0335
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6061| Best HMM Match : NACHT (HMM E-Value=0.00065)                  29   3.9  
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_51400| Best HMM Match : Kinesin (HMM E-Value=0)                     27   9.1  
SB_39336| Best HMM Match : Kinesin (HMM E-Value=0)                     27   9.1  
SB_3187| Best HMM Match : WD40 (HMM E-Value=2.2e-08)                   27   9.1  

>SB_6061| Best HMM Match : NACHT (HMM E-Value=0.00065)
          Length = 879

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -2

Query: 570 VVRKIIHNSTFNVIKIAFTDDFCYCVMPH 484
           V+  + HN +  ++K+ ++ D+CY +  H
Sbjct: 511 VINALQHNKSVKILKLYYSSDYCYDLHEH 539


>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1892

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +3

Query: 189  SLRHISEHIHGYDVASETTNLKLNSPDMNFHVNRTSKINVIH 314
            +L   ++ IH      +TT   L++ D+  +++RT K N+++
Sbjct: 1702 NLESHTQTIHNTRCRKKTTGQPLSALDLGVYIDRTLKTNIVY 1743


>SB_51400| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 455

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 231 ASETTNLKLNSPDMNFHVNRTSKINVIHNQNSSDTAKLNSLFHNTRTELV 380
           A +  +L+ +   M  H ++ ++   I+NQ      +LN + HN   E V
Sbjct: 20  AQDMIDLQQDGKSMTIHCSKDTRRGYINNQVLDWNFQLNKVLHNASQETV 69


>SB_39336| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 558

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 231 ASETTNLKLNSPDMNFHVNRTSKINVIHNQNSSDTAKLNSLFHNTRTELV 380
           A +  +L+ +   M  H ++ ++   I+NQ      +LN + HN   E V
Sbjct: 20  AQDMIDLQQDGKSMTIHCSKDTRRGYINNQVLDWNFQLNKVLHNASQETV 69


>SB_3187| Best HMM Match : WD40 (HMM E-Value=2.2e-08)
          Length = 1259

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -3

Query: 470 LGQHNLCVASRLLQSTCLFLH 408
           L QHNL   S+LLQ T  FLH
Sbjct: 56  LQQHNLHFTSQLLQMTLRFLH 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,719,402
Number of Sequences: 59808
Number of extensions: 342420
Number of successful extensions: 758
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)