Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0335
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48090.2 68414.m05363 C2 domain-containing protein contains P...    28   4.2  
At1g48090.1 68414.m05362 C2 domain-containing protein contains P...    28   4.2  
At1g05950.1 68414.m00624 expressed protein                             28   4.2  
At3g24430.1 68416.m03066 expressed protein contains Pfam profile...    28   5.6  
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)...    27   9.8  

>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
            profile: PF00168 C2 domain
          Length = 3427

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 219  GYDVASETTNLKLNSPDMNFHVNRTSKINVIHNQNSSDTAKLNS 350
            GY    E TN+ L S D+  H++  S ++++ N  S  T  L S
Sbjct: 2006 GYTSVKEKTNMSLTSTDIYMHLS-LSALSLLLNLQSQVTGALQS 2048


>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
            profile: PF00168 C2 domain
          Length = 4144

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 219  GYDVASETTNLKLNSPDMNFHVNRTSKINVIHNQNSSDTAKLNS 350
            GY    E TN+ L S D+  H++  S ++++ N  S  T  L S
Sbjct: 2006 GYTSVKEKTNMSLTSTDIYMHLS-LSALSLLLNLQSQVTGALQS 2048


>At1g05950.1 68414.m00624 expressed protein
          Length = 590

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/29 (34%), Positives = 22/29 (75%)
 Frame = +2

Query: 434 ATDLRHKDYAVLNKNVVCGITQ*QKSSVK 520
           AT + HKD  +L +++VC +++ +K++V+
Sbjct: 199 ATGVNHKDIVILERHLVCSLSE-EKTAVR 226


>At3g24430.1 68416.m03066 expressed protein contains Pfam profile
           PF01883: Domain of unknown function
          Length = 532

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 260 FSRYELPCQQNIEN*CHTQSELKRH 334
           FS+ ++PC   +EN CH  ++ KR+
Sbjct: 332 FSKLKVPCVAVVENMCHFDADGKRY 356


>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
           identical to SP|O65607 DNA mismatch repair protein MSH3
           (AtMsh3) {Arabidopsis thaliana}
          Length = 1081

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 258 NSPDMNFHVNRTSKINVIHNQNSSDTAKLNSLFHNTRTELVRYAN 392
           ++ +M    N   ++ V+  +N+SD ++  SLFHN    L  Y +
Sbjct: 416 SNTEMTLSANTLQQLEVV--KNNSDGSESGSLFHNMNHTLTVYGS 458


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,033,663
Number of Sequences: 28952
Number of extensions: 225601
Number of successful extensions: 461
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)