Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0334
         (693 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1Q1Q5 Cluster: Putative uncharacterized protein; n=1; ...    34   2.9  
UniRef50_Q8ILC9 Cluster: Putative uncharacterized protein; n=1; ...    33   5.0  
UniRef50_A3YPJ0 Cluster: Transporter, putative; n=10; Campylobac...    33   8.8  
UniRef50_Q4N4Y1 Cluster: DNA helicase, putative; n=2; Theileria|...    33   8.8  

>UniRef50_Q1Q1Q5 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Kuenenia stuttgartiensis|Rep: Putative
           uncharacterized protein - Candidatus Kuenenia
           stuttgartiensis
          Length = 72

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 208 PASNS-VAASNHGIIL*LMNKHVLLKPRTQQNYQFPANSNI 89
           PAS S VAA+ HG +   MNKH  LK ++   Y    N+++
Sbjct: 17  PASPSAVAATTHGKVSGKMNKHTFLKEKSMSQYHIKNNNSV 57


>UniRef50_Q8ILC9 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 5561

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 479 FFLQEYLKKILYLIN*FYKK-NVNYKLRRKK 568
           F L  Y KKI Y+IN +YK  N  YK ++KK
Sbjct: 139 FILINYQKKIFYIINIYYKDINCQYKKKKKK 169


>UniRef50_A3YPJ0 Cluster: Transporter, putative; n=10;
           Campylobacterales|Rep: Transporter, putative -
           Campylobacter jejuni subsp. jejuni 260.94
          Length = 399

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 419 FTHNSLLKTLHTRHCLSRGEFFLQEYLKKILYLIN*FYKKNVNYKL 556
           F+H +LLKT     C    +F L  YL+KIL  I+ F  ++  Y L
Sbjct: 199 FSHQNLLKTYTITICSCGAQFVLYTYLQKILVEISGFKVQDTAYIL 244


>UniRef50_Q4N4Y1 Cluster: DNA helicase, putative; n=2;
           Theileria|Rep: DNA helicase, putative - Theileria parva
          Length = 998

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -2

Query: 638 RCYNTFYDITTVPLNEFINFITRSSSFVVCN*HFFYKINLLNIKFF*D 495
           +C NT+    T+ LNEF+ F  +S+S        F + N LN+++F D
Sbjct: 41  KCINTYETPYTILLNEFLEFARKSASLPEPAIVPFTRRNALNLEYFQD 88


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,064,411
Number of Sequences: 1657284
Number of extensions: 9780301
Number of successful extensions: 18821
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18821
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)