Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0334
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0385 - 5095410-5095445,5095595-5095796,5095905-5095979,509...    29   2.6  
10_08_1010 + 22230329-22230658,22231033-22231298,22231411-222315...    29   4.6  
08_02_0384 + 16552194-16552621,16552909-16553173,16553239-16553337     28   6.1  

>04_01_0385 -
           5095410-5095445,5095595-5095796,5095905-5095979,
           5096460-5096484,5097032-5097137
          Length = 147

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 284 SPTCPREAGSHSNNLNDIKLLKWI 355
           SP  P  A SH+N   D+K+L+W+
Sbjct: 22  SPLRPPSAASHTNQAVDMKVLRWL 45


>10_08_1010 +
           22230329-22230658,22231033-22231298,22231411-22231528,
           22231842-22232050,22232297-22232750
          Length = 458

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 653 VSCSCRCYNTFYDITT 606
           VSC  RCYN F+DI T
Sbjct: 297 VSCIKRCYNDFWDIVT 312


>08_02_0384 + 16552194-16552621,16552909-16553173,16553239-16553337
          Length = 263

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 118 NYQFPANSNITLSVDMENTRYARNGHNTVIIL 23
           ++QF  NS    S     TRYA  GH+ ++I+
Sbjct: 177 HHQFITNSPFLFSSPQTATRYAATGHDDLVII 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,043,735
Number of Sequences: 37544
Number of extensions: 247986
Number of successful extensions: 386
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)