Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0334
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57510| Best HMM Match : Keratin_B2 (HMM E-Value=5.4)                23   6.0  
SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)                      24   6.8  

>SB_57510| Best HMM Match : Keratin_B2 (HMM E-Value=5.4)
          Length = 198

 Score = 23.4 bits (48), Expect(2) = 6.0
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = -2

Query: 686 CFTNRKQKGM-TVSCSCRC 633
           CF  R    M +++CSCRC
Sbjct: 44  CFPPRAHVDMFSIACSCRC 62



 Score = 23.4 bits (48), Expect(2) = 6.0
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -2

Query: 656 TVSCSCRCY 630
           T++CSCRC+
Sbjct: 83  TIACSCRCF 91


>SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 879

 Score = 23.8 bits (49), Expect(2) = 6.8
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = -2

Query: 686 CFTNRKQKGMT-VSCSCRC 633
           CF +R    +  +SCSCRC
Sbjct: 144 CFPSRAHVDVVPISCSCRC 162



 Score = 22.6 bits (46), Expect(2) = 6.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 653 VSCSCRCYNTFYDITTVPLNEFINFITRS 567
           ++CSCRC         VP   FI+  + S
Sbjct: 184 IACSCRCVPITCSRRCVPHRVFISLCSPS 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,092,598
Number of Sequences: 59808
Number of extensions: 305882
Number of successful extensions: 628
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)