Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0334
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical p...    28   5.5  

>Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 210 IRQVTLWLLQTTA*SFNL*INTSYLNHERNKITNFLLTQISR 85
           ++QV ++ L   A +FN   +T+Y+N   ++   FL T +SR
Sbjct: 8   VKQVCIFALIAFASNFNYGFSTTYINTSVDEFKTFLNTSLSR 49


>Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 210 IRQVTLWLLQTTA*SFNL*INTSYLNHERNKITNFLLTQISR 85
           ++QV ++ L   A +FN   +T+Y+N   ++   FL T +SR
Sbjct: 8   VKQVCIFALIAFASNFNYGFSTTYINTSVDEFKTFLNTSLSR 49


>Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical
            protein ZK856.13 protein.
          Length = 1037

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 416  TFTHNSLLKTLHTRHCLS-RGEFFLQEYLK 502
            TFTH S  K L +RH +  RG  F+++Y K
Sbjct: 918  TFTHMSCKKDLSSRHLIGIRGIAFMKKYSK 947


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,564,228
Number of Sequences: 27780
Number of extensions: 240282
Number of successful extensions: 480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)