Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0333
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    32   0.37 
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    31   0.64 
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458...    29   2.6  
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052...    29   4.5  
03_05_1007 - 29637911-29638333,29640095-29640282,29640688-296407...    28   7.9  

>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +2

Query: 266 PVTPMEVKDLIKDLRPRKAPGSDG--ISN--RVIKLLPVQLIVMLASIFNAAIAN 418
           P +  E+KD +  + P KAPG DG  + N   + K  P+ L  +L  I +  +AN
Sbjct: 152 PYSDDEIKDALFQMGPTKAPGPDGRKVHNPEHLSKFRPISLCNVLYKIASKVLAN 206


>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 551  STNASETSSHPRAFSSMNNSDSVQITHGVQQVHRL 655
            +++A +  S    FS  N S +V++THG+QQVH L
Sbjct: 1746 TSHAGQAVSSAEKFSESNLS-AVELTHGIQQVHYL 1779


>11_04_0144 +
           14044973-14044984,14045050-14045183,14045329-14045824,
           14046097-14046117,14047504-14047767,14048635-14048715
          Length = 335

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 281 EVKDLIKDLRPRKAPGSDGISNRVIK 358
           EV +LIK ++P KAP  DGI+   +K
Sbjct: 226 EVDNLIKVIQPDKAPSPDGINGYFLK 251


>04_04_0917 -
           29404341-29404519,29404610-29404744,29404898-29405225,
           29405313-29405532,29405653-29406647,29407233-29407493,
           29407534-29407872,29409309-29409497
          Length = 881

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +3

Query: 27  RSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELL 146
           +S +RLAR L S  +  +P  V PSG    F   EKA LL
Sbjct: 586 KSKFRLARLL-SFRLYNVPMDVSPSGICGPFKQPEKANLL 624


>03_05_1007 -
           29637911-29638333,29640095-29640282,29640688-29640773,
           29641108-29641173,29641289-29641331,29641398-29642328
          Length = 578

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -1

Query: 378 MSWTGRSLITRLDIP-SEPGA 319
           MSW  RSL T L+IP  +PGA
Sbjct: 1   MSWLARSLATSLNIPEDDPGA 21


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,035,011
Number of Sequences: 37544
Number of extensions: 431239
Number of successful extensions: 1168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)