Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0333
(684 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript... 64 5e-12
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript... 63 7e-12
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript... 62 1e-11
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript... 61 4e-11
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript... 59 1e-10
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript... 58 2e-10
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra... 58 3e-10
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript... 58 3e-10
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein. 57 5e-10
AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcript... 57 5e-10
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript... 57 6e-10
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript... 54 3e-09
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript... 54 3e-09
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ... 54 4e-09
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript... 51 3e-08
AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcript... 50 5e-08
M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles ... 44 3e-06
AJ970245-1|CAI96717.1| 134|Anopheles gambiae putative reverse t... 37 5e-04
AJ438610-1|CAD27473.1| 838|Anopheles gambiae putative microtubu... 27 0.42
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p... 25 1.7
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel... 24 3.9
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein. 24 5.1
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p... 23 9.0
>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
protein.
Length = 1049
Score = 63.7 bits (148), Expect = 5e-12
Identities = 30/82 (36%), Positives = 46/82 (56%)
Frame = +2
Query: 266 PVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKE 445
P+T E+ +L L+ KAPG DGI N IK + + ++ + FP++WK
Sbjct: 453 PITRQEIINLANRLKCGKAPGIDGIPNMAIKAAMLAYPDVFKNVLMNTLTTGQFPSMWKI 512
Query: 446 ADVIGIHKPGKPKNHPTSYRPL 511
++ I KPGKP HP+++RPL
Sbjct: 513 QKLVLIPKPGKPPGHPSAFRPL 534
Score = 30.3 bits (65), Expect = 0.059
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 266 PVTPMEVKDLIKDLRPRKAPGSDGISNRVIK 358
P+T E+ +L L+ APG DGI N IK
Sbjct: 392 PITRQEIINLANRLKCGNAPGIDGIPNMAIK 422
>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 63.3 bits (147), Expect = 7e-12
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = +2
Query: 266 PVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKE 445
PVT +E++ + D+ RKAPG DGI N +K + + SI+ FPA WK
Sbjct: 432 PVTDLELERIADDMCSRKAPGLDGIPNIALKTAIKKHTAVFRSIYQGCFDRGEFPAHWKI 491
Query: 446 ADVIGIHKPGKPKNHPTSYRPL 511
++ + KPGKP +S+RPL
Sbjct: 492 QRLVLLQKPGKPPGESSSFRPL 513
Score = 34.7 bits (76), Expect = 0.003
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 490 SDELPPVSLLMSLGKLYERLIYKRLRDFVSS--KGILIDEQFGFRTNHS 630
S P+ +L LGK+ ERLI RL +F+ + L Q+GFR S
Sbjct: 507 SSSFRPLGMLNGLGKVLERLILNRLNEFLENGETSHLSPNQYGFRRGKS 555
>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
protein.
Length = 1099
Score = 62.5 bits (145), Expect = 1e-11
Identities = 30/85 (35%), Positives = 47/85 (55%)
Frame = +2
Query: 257 ALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAV 436
A+ V+ E+K + + + +KAPG DGI N +K ++ + +++ + N FPA
Sbjct: 409 AVADVSDDELKLIARRMANKKAPGLDGIPNAAVKAAILEHTGVFTALYQDCLVNGTFPAA 468
Query: 437 WKEADVIGIHKPGKPKNHPTSYRPL 511
WK ++ I KPGKP SYRPL
Sbjct: 469 WKRQRLVLIPKPGKPSGVSCSYRPL 493
Score = 34.7 bits (76), Expect = 0.003
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +1
Query: 505 PVSLLMSLGKLYERLIYKRLRDFVS--SKGILIDEQFGFR 618
P+ +L +LGK+ ERLI RL +F+ L D Q+GFR
Sbjct: 492 PLCMLDALGKVLERLILNRLHEFLEDPESPRLSDRQYGFR 531
>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
protein.
Length = 1154
Score = 60.9 bits (141), Expect = 4e-11
Identities = 28/82 (34%), Positives = 43/82 (52%)
Frame = +2
Query: 269 VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKEA 448
VTP E++D+ + RKAPG DGI N +K + ++ + FP+ WK
Sbjct: 427 VTPRELQDIAHQMATRKAPGLDGIPNAAVKAAIGMYPDVFCRMYQDCLTRGTFPSEWKRQ 486
Query: 449 DVIGIHKPGKPKNHPTSYRPLA 514
++ + K GKP +SYRPL+
Sbjct: 487 RLVLLSKTGKPPGESSSYRPLS 508
Score = 32.7 bits (71), Expect = 0.011
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 490 SDELPPVSLLMSLGKLYERLIYKRLRDFVSSKGI--LIDEQFGFRTNHS 630
S P+S+L +LGK+ E+LI RL + L D Q+GFR S
Sbjct: 501 SSSYRPLSMLDALGKVLEQLILNRLNKHLEDPDSPRLSDAQYGFRRGRS 549
>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
protein.
Length = 1248
Score = 59.3 bits (137), Expect = 1e-10
Identities = 26/84 (30%), Positives = 44/84 (52%)
Frame = +2
Query: 260 LPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVW 439
L VT +E++ + ++PRKAPG DG+ N + ++ + FP W
Sbjct: 414 LREVTDLELQIIASGMQPRKAPGLDGVPNAALASAIKNYPGSFRQVYQECLDRSCFPEQW 473
Query: 440 KEADVIGIHKPGKPKNHPTSYRPL 511
K+ ++ + KPGKP P+S+RP+
Sbjct: 474 KKQRLVLLPKPGKPPGDPSSFRPI 497
>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
protein.
Length = 1201
Score = 58.4 bits (135), Expect = 2e-10
Identities = 27/81 (33%), Positives = 41/81 (50%)
Frame = +2
Query: 269 VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKEA 448
V P E+ + + RKAPG DGI N +K+ + ++ ++ FP WK
Sbjct: 488 VEPQELLSIAAGMVTRKAPGLDGIPNAAVKVAIEEYTEEFCRLYQDCLSRGTFPPQWKRQ 547
Query: 449 DVIGIHKPGKPKNHPTSYRPL 511
++ + KPGKP +SYRPL
Sbjct: 548 RLVLLPKPGKPPGESSSYRPL 568
Score = 33.5 bits (73), Expect = 0.006
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 490 SDELPPVSLLMSLGKLYERLIYKRLRDFVSSKGI--LIDEQFGFRTNHS 630
S P+ +L +LGK+ ERLI RL + + L D Q+GFR S
Sbjct: 562 SSSYRPLCMLDALGKVLERLILNRLNRHIEQQDSPQLSDAQYGFRRGRS 610
>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
transcriptase protein.
Length = 1049
Score = 58.0 bits (134), Expect = 3e-10
Identities = 28/80 (35%), Positives = 46/80 (57%)
Frame = +2
Query: 284 VKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKEADVIGI 463
V + L+P APG DGI + V+K + +LA +FNA++AN FP W+++ ++ I
Sbjct: 546 VLSALAQLKPSFAPGPDGIPSTVLKRCQTTVAPILAKLFNASLANGYFPKAWRKSWMVPI 605
Query: 464 HKPGKPKNHPTSYRPLASSC 523
+K G + +YR + S C
Sbjct: 606 YKKG-DRTDAINYRGITSLC 624
>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 57.6 bits (133), Expect = 3e-10
Identities = 27/81 (33%), Positives = 43/81 (53%)
Frame = +2
Query: 269 VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKEA 448
VTP E++++ + RKAPG DGI N +K+ + + ++ + FP WK
Sbjct: 435 VTPEELQEIAAHMAIRKAPGLDGIPNAAVKVAIEKYPGVFCRVYQDCLNTGTFPQQWKRQ 494
Query: 449 DVIGIHKPGKPKNHPTSYRPL 511
++ + KPGK +SYRPL
Sbjct: 495 RLVLLPKPGKAPGESSSYRPL 515
Score = 31.1 bits (67), Expect = 0.034
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 490 SDELPPVSLLMSLGKLYERLIYKR-LRDFVSSKGILIDEQFGFRTNHS 630
S P+ +L +LGK+ ERLI R L D S + L D Q+GFR S
Sbjct: 509 SSSYRPLCMLDALGKVLERLILNRHLEDPDSPQ--LSDAQYGFRRGRS 554
>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
Length = 1212
Score = 57.2 bits (132), Expect = 5e-10
Identities = 27/81 (33%), Positives = 43/81 (53%)
Frame = +2
Query: 269 VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKEA 448
VT E++ + + +KAPG DGI N +K + + +++ + + FPA WK
Sbjct: 480 VTIPELRLIASTMPNKKAPGLDGIPNAAVKAAILAYTDVFQALYQSCLETATFPAPWKRQ 539
Query: 449 DVIGIHKPGKPKNHPTSYRPL 511
++ + KPGKP SYRPL
Sbjct: 540 RLVLLPKPGKPPGSNGSYRPL 560
>AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcriptase
protein.
Length = 988
Score = 57.2 bits (132), Expect = 5e-10
Identities = 25/77 (32%), Positives = 39/77 (50%)
Frame = +2
Query: 281 EVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKEADVIG 460
E+K++ + L P+KAPG D I N + + A + + FP WK ++
Sbjct: 417 ELKEIARSLNPKKAPGDDNIPNMAAAAAILAFPEVFAKSYKQLLEAGTFPDAWKRQQLVL 476
Query: 461 IHKPGKPKNHPTSYRPL 511
+ K GKP P+SYRP+
Sbjct: 477 LTKSGKPPGEPSSYRPI 493
Score = 42.7 bits (96), Expect = 1e-05
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +1
Query: 505 PVSLLMSLGKLYERLIYKRLRDFVSSKGILIDEQFGFRTNHS 630
P+ LL LGK+ ERLI +RL + S G L D Q+GFR S
Sbjct: 492 PICLLSVLGKILERLIQRRLTTHLESTGGLSDPQYGFRKGRS 533
>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
protein.
Length = 1222
Score = 56.8 bits (131), Expect = 6e-10
Identities = 28/81 (34%), Positives = 41/81 (50%)
Frame = +2
Query: 269 VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKEA 448
V E+ D+ L PRKAPG DG+ N + + + +F + N FP WK+
Sbjct: 419 VNEQELLDIASSLNPRKAPGLDGVPNAALTAAIRKHTDIFKKLFQECLDNERFPDEWKKQ 478
Query: 449 DVIGIHKPGKPKNHPTSYRPL 511
+ I KPGKP +S+RP+
Sbjct: 479 KLALIPKPGKPPGLASSFRPI 499
Score = 34.7 bits (76), Expect = 0.003
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 505 PVSLLMSLGKLYERLIYKRLRDFVS--SKGILIDEQFGFRTNHS 630
P+ LL + GK+YERL+ R+ D + L + Q+GFR S
Sbjct: 498 PILLLNNPGKVYERLLLSRINDVIEDPESPRLAENQYGFRRGRS 541
>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
protein.
Length = 1168
Score = 54.4 bits (125), Expect = 3e-09
Identities = 24/77 (31%), Positives = 39/77 (50%)
Frame = +2
Query: 281 EVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKEADVIG 460
E+ + + PRKAPG DG+ N + + Q +F + FP WK+ ++
Sbjct: 426 ELDQIAASMHPRKAPGLDGVPNAALTVALRQQPEPFRRVFQECLDMSCFPQPWKKQRLVL 485
Query: 461 IHKPGKPKNHPTSYRPL 511
+ KPGK P+S+RP+
Sbjct: 486 LPKPGKSPGEPSSFRPI 502
>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
protein.
Length = 1009
Score = 54.4 bits (125), Expect = 3e-09
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +2
Query: 269 VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKEA 448
+T E+ + + L +KAPG DGI N +K+ + ++ + N FP WK
Sbjct: 397 ITNDEILAVARRLPNKKAPGPDGIPNEALKVGMLTATDAFCRVYQGCLENAKFPDEWKRQ 456
Query: 449 DVIGIHKPGKPKNHPTSYRPL 511
++ I KP KP P S RP+
Sbjct: 457 RLVLIPKPNKPPGEPGSVRPI 477
Score = 36.7 bits (81), Expect = 7e-04
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 505 PVSLLMSLGKLYERLIYKRLRDFVSSKGILIDEQFGFRTNHS 630
P+ LL GK ER+I +RL + L D+QFGFR+ S
Sbjct: 476 PICLLDGAGKGLERIIVQRLNAHIEEVNGLSDDQFGFRSRRS 517
>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 1222
Score = 54.0 bits (124), Expect = 4e-09
Identities = 28/88 (31%), Positives = 41/88 (46%)
Frame = +2
Query: 248 TLDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIF 427
T + PVT E+ + + KAPG DGI N +K + ++ + F
Sbjct: 466 TTAGIAPVTDDELLLIASQMANHKAPGLDGIPNAAVKTAIMLFPESSGFLYQDCLNRASF 525
Query: 428 PAVWKEADVIGIHKPGKPKNHPTSYRPL 511
PA WK ++ + K GKP +SYRPL
Sbjct: 526 PAQWKRQRLVLLPKQGKPPGESSSYRPL 553
Score = 36.3 bits (80), Expect = 0.001
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 490 SDELPPVSLLMSLGKLYERLIYKRLRDFVS--SKGILIDEQFGFRTNHS 630
S P+ +L +LGK+ ERLI RL + + S L D QFGFR S
Sbjct: 547 SSSYRPLCMLDALGKVLERLILNRLNEHLEEPSSPRLSDRQFGFRRGRS 595
>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
protein.
Length = 1022
Score = 51.2 bits (117), Expect = 3e-08
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +2
Query: 269 VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKEA 448
VT E++++ + L+ RK PG DGI N + ++ + ++ + +FP WK+
Sbjct: 401 VTDEEIRNIGRSLKSRKVPGPDGIPNAALATAMIEEPTIFKKVYQRCLDTGVFPDNWKKQ 460
Query: 449 D-VIGIHKPGKPKNHPTSYRPL 511
V+ I KPGK S RP+
Sbjct: 461 RLVLSIPKPGKRPGESGSSRPI 482
>AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcriptase
protein.
Length = 973
Score = 50.4 bits (115), Expect = 5e-08
Identities = 26/78 (33%), Positives = 37/78 (47%)
Frame = +2
Query: 281 EVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKEADVIG 460
E++ L+ KAPG DGI IK + S+F FP WK ++
Sbjct: 397 EIQKAADHLKLGKAPGPDGIPIEAIKAAIKAYLEAFLSVFQNCFDTGFFPIPWKRQKLVL 456
Query: 461 IHKPGKPKNHPTSYRPLA 514
+ KPGKP + ++ RPLA
Sbjct: 457 LPKPGKPPDDASALRPLA 474
>M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles
gambiae T1 retroposon. ).
Length = 975
Score = 44.4 bits (100), Expect = 3e-06
Identities = 26/85 (30%), Positives = 44/85 (51%)
Frame = +2
Query: 269 VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKEA 448
V+ V ++ L+ PG DGI V+ L LA IFN +++ +FPA+WK
Sbjct: 470 VSSETVVQVLFGLKRSFTPGPDGIPASVLINCKDVLAPHLAKIFNLSLSLGVFPALWKSC 529
Query: 449 DVIGIHKPGKPKNHPTSYRPLASSC 523
+ +HK G ++ ++YR + +C
Sbjct: 530 WLFPVHKKG-CRSIVSNYRGITQTC 553
>AJ970245-1|CAI96717.1| 134|Anopheles gambiae putative reverse
transcriptase protein.
Length = 134
Score = 37.1 bits (82), Expect = 5e-04
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +1
Query: 505 PVSLLMSLGKLYERLIYKRLRDFVSSKGILIDEQFGFRTNHS 630
P+SLL LGK++E+L+ R+ + I+ QFGFR + S
Sbjct: 4 PISLLSCLGKIFEKLLESRMALHTFNNNIIPKSQFGFRPSLS 45
>AJ438610-1|CAD27473.1| 838|Anopheles gambiae putative microtubule
binding protein protein.
Length = 838
Score = 27.5 bits (58), Expect = 0.42
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +3
Query: 21 SQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQ-SVIP 197
++RS T TV+ P L PS + + L A +P+ Q S+ P
Sbjct: 40 AERSISGTESTKPVPTVLGGPNLFAPSAVSSQLQRPQPTVLAA-------SPAPQPSLAP 92
Query: 198 VHVELVDSEVERRASLPPSMRYHPSPRWKLK 290
V V + R S PP+ R+ P PR ++K
Sbjct: 93 VVPSSVVTAPPARPSQPPTTRFAPEPRAEVK 123
>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
protein.
Length = 1077
Score = 25.4 bits (53), Expect = 1.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 269 VTPMEVKDLIKDLRPRKAPGSDGI 340
+T E+ IK+ + RK+PG DGI
Sbjct: 444 ITSGEILYAIKNSQSRKSPGPDGI 467
>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
cytoskeletal structural protein protein.
Length = 1645
Score = 24.2 bits (50), Expect = 3.9
Identities = 7/30 (23%), Positives = 16/30 (53%)
Frame = +2
Query: 398 FNAAIANCIFPAVWKEADVIGIHKPGKPKN 487
+ ++ NC+ P+ W++ + GK +N
Sbjct: 682 YKLSVPNCVVPSSWRDVESRDNRFAGKQRN 711
>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
Length = 1036
Score = 23.8 bits (49), Expect = 5.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 96 PSGRLAAFDDDEKAELLADTLQTQCTPSTQ 185
P R+ F ELL +T + CTP Q
Sbjct: 138 PQDRVQDFTKMNPRELLLNTQSSVCTPEVQ 167
>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
protein.
Length = 3325
Score = 23.0 bits (47), Expect = 9.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 380 VMLASIFNAAIANCIFPAVWKEADV 454
V+ A+ + A+ C+F + W+E V
Sbjct: 377 VVAATFLDVAVLRCLFISHWQEEGV 401
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 735,013
Number of Sequences: 2352
Number of extensions: 15248
Number of successful extensions: 57
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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