Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0333
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 56 3e-08
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 43 2e-04
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 43 2e-04
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 40 0.002
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 32 0.44
AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical... 28 7.1
AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical... 28 7.1
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = +2
Query: 269 VTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKEA 448
+T +E+ ++ + P A G DGI+ I+ LP+ LA ++N +++ I P WK+A
Sbjct: 328 ITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKA 387
Query: 449 DVIGIHKPGKPKNHPTSYRPLA 514
+VI I KP K +SYRP++
Sbjct: 388 NVIMIPKPKKDPAIASSYRPIS 409
Score = 34.3 bits (75), Expect = 0.082
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +1
Query: 505 PVSLLMSLGKLYERLIYKRLRDFVSSKGILIDEQFGFRTNHSWRSTGAPPSRRHILVGLN 684
P+SLL + KL E+ I KR+++ + S Q GF+ HS +T I+ GLN
Sbjct: 407 PISLLSPIAKLLEKAILKRIKNSIESPA----HQHGFKPEHS-TTTAVIQVTNDIIGGLN 461
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 42.7 bits (96), Expect = 2e-04
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Frame = +2
Query: 131 KSRATGRYIANPVHAQHSIRNPCS--CRISRQ*GRTQSLLATLDALPPVTPMEVKDLIKD 304
KS +TG I + V + I + + + +T S+ AT PP P E++ +++
Sbjct: 500 KSTSTGERITSRVKMEQEIEKFYTELFKSAVSNSQTSSIPATATP-PPFLPEEIRHVLRS 558
Query: 305 LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKEADVIGIHKPGKPK 484
KA G D IS +K +I ++ FN + + P WK + I K G +
Sbjct: 559 FPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRE 618
Query: 485 NHPTSYRPL 511
N +YRP+
Sbjct: 619 N-LENYRPI 626
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 42.7 bits (96), Expect = 2e-04
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Frame = +2
Query: 131 KSRATGRYIANPVHAQHSIRNPCS--CRISRQ*GRTQSLLATLDALPPVTPMEVKDLIKD 304
KS +TG I + V + I + + + +T S+ AT PP P E++ +++
Sbjct: 239 KSTSTGERITSRVKMEQEIEKFYTELFKSAVSNSQTSSIPATATP-PPFLPEEIRHVLRS 297
Query: 305 LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKEADVIGIHKPGKPK 484
KA G D IS +K +I ++ FN + + P WK + I K G +
Sbjct: 298 FPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRE 357
Query: 485 NHPTSYRPL 511
N +YRP+
Sbjct: 358 N-LENYRPI 365
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 39.9 bits (89), Expect = 0.002
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 1/128 (0%)
Frame = +2
Query: 131 KSRATGRYIANPVHAQHSIRNPCSCRISRQ*GRTQ-SLLATLDALPPVTPMEVKDLIKDL 307
KS +TG I + V + I + +Q S + T PP P +++ ++
Sbjct: 329 KSTSTGERITSRVKMEQEIEKFYTEFFKSAVSNSQASSIPTTATPPPFLPEKIRYALRSF 388
Query: 308 RPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPAVWKEADVIGIHKPGKPKN 487
KA G D IS +K +I ++ FN + + P WK + I K G +N
Sbjct: 389 PNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN 448
Query: 488 HPTSYRPL 511
+YRP+
Sbjct: 449 -LENYRPI 455
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 31.9 bits (69), Expect = 0.44
Identities = 21/74 (28%), Positives = 32/74 (43%)
Frame = +2
Query: 254 DALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIFPA 433
+ LPP E++ I KA GSD I+ +K +I ++ FN + + P
Sbjct: 391 EPLPPFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLESGNIPK 450
Query: 434 VWKEADVIGIHKPG 475
WK + I K G
Sbjct: 451 DWKTSKTTLIFKKG 464
>AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15a protein.
Length = 933
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +2
Query: 263 PPVTPMEVKDLIKDLRPRKAPGSDGISNR 349
PP P ++++LI+D+ R +PG + +++R
Sbjct: 873 PPELPDQLRNLIEDVARRASPGPEQMNDR 901
>AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15b protein.
Length = 832
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +2
Query: 263 PPVTPMEVKDLIKDLRPRKAPGSDGISNR 349
PP P ++++LI+D+ R +PG + +++R
Sbjct: 772 PPELPDQLRNLIEDVARRASPGPEQMNDR 800
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,979,615
Number of Sequences: 27780
Number of extensions: 331843
Number of successful extensions: 843
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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