Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0333
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   2.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.7  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   4.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.3  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 327 VPTVYLTALLNFYPSNSS 380
           VP++YLT   N  P+N S
Sbjct: 42  VPSIYLTYAKNILPNNIS 59


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 244 CHPRCVTTRHPDGS*RLDQRPTSSQGSRFRRY 339
           CH R   +RH DG+   +    S    R R Y
Sbjct: 230 CHSRYEDSRHEDGNSYRNDGERSCSRDRSREY 261


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +1

Query: 598 DEQFGFRTNHSWRSTGAPPSRRHIL 672
           D   GF  N    ST   P + H+L
Sbjct: 623 DSNMGFLNNSMCTSTTTSPDKEHVL 647


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 293 LIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAIANCIF 427
           LIK    ++  G + IS+ + K L + + V++ +   + +AN +F
Sbjct: 119 LIKGFDKKQGGGIELISHIISKQLHIPVSVLMGANLASEVANEMF 163


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 586 GILIDEQFGFRTNHSWRSTGAPPSRRHILVGL 681
           GIL+ E    R  H  RST   P  +  + G+
Sbjct: 513 GILVYEPSACRPRHEIRSTDVIPGTQEHVCGV 544


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,519
Number of Sequences: 438
Number of extensions: 4165
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)