Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0333
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23160.1 68417.m03342 protein kinase family protein contains ...    32   0.31 
At4g13390.1 68417.m02092 proline-rich extensin-like family prote...    31   0.71 
At1g23720.1 68414.m02994 proline-rich extensin-like family prote...    29   2.2  
At3g50370.1 68416.m05508 expressed protein                             28   5.0  
At3g54580.1 68416.m06039 proline-rich extensin-like family prote...    28   6.6  
At1g09090.2 68414.m01015 respiratory burst oxidase protein B (Rb...    27   8.8  
At1g09090.1 68414.m01014 respiratory burst oxidase protein B (Rb...    27   8.8  

>At4g23160.1 68417.m03342 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 1262

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 511 SLLMSLGKLYERLIYKRLRDFVSSKGILIDEQFGFRTNHSWRSTGAPPSRRHI 669
           S L+ + K  E   Y   ++F+   G + DE     T H+W     PP+++ I
Sbjct: 75  SFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPI 127


>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 429

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 237 ASLPPSMRYHPSPRWKLKT*SKTYVLARLPVPTVY 341
           +S PP   Y PSPR   K+    YV   LP P VY
Sbjct: 312 SSPPPPTYYSPSPRVDYKSPPPPYVYNSLPPPYVY 346



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 246 PPSMRYHPSPRWKLKT*SKTYVLARLPVPTVY 341
           PP + Y PSP+ + K+    YV + LP  T Y
Sbjct: 108 PPQLYYSPSPKVEYKSPPPPYVYSSLPPLTYY 139



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 240 SLPPSMRYHPSPRWKLKT*SKTYVLARLPVPTVY 341
           S PP   Y PSP+   K+    YV +  P PT Y
Sbjct: 287 SPPPPSYYSPSPKIDYKSPPPPYVYSSPPPPTYY 320



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/77 (27%), Positives = 30/77 (38%)
 Frame = +3

Query: 237 ASLPPSMRYHPSPRWKLKT*SKTYVLARLPVPTVYLTALLNFYPSNSS*CWHLFSMPLSR 416
           +S PP   Y PSP+   K+    YV +  P P  Y  +    Y S      + F  P   
Sbjct: 157 SSPPPPPYYSPSPKVDYKSPPPPYVYSSPPPPPYYSPSPKVEYKSPPPPYVYSFPPPPPY 216

Query: 417 TVSFPRCGKKRTLSAYI 467
               P+ G K   + Y+
Sbjct: 217 YSPSPKVGYKSPPAPYV 233


>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 895

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 237 ASLPPSMRYHPSPRWKLKT*SKTYVLARLPVPTVY 341
           +S PP   Y PSP+ + K+    YV +  P PT Y
Sbjct: 792 SSPPPPPYYSPSPKVEYKSPPPPYVYSSPPPPTYY 826


>At3g50370.1 68416.m05508 expressed protein
          Length = 2179

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 99   SGRLAAFDDDEKAELLADTLQTQCTPSTQSVIPVHVELVDSEVERRASLPPS 254
            S  +  F++  + E+ +D  + +C  +++S  P+H   VDS  + R S+  S
Sbjct: 990  SNLVLGFNEGVEVEIPSDDFE-KCQRNSESTFPLHQHTVDSLDDERPSIETS 1040


>At3g54580.1 68416.m06039 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 951

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = +3

Query: 174 PSTQSVIPVHVELVDSEVERRASLPPSMRYHPSPRWKLKT*SKTYVLARLPVPT 335
           P T S  P  VE          S PP   Y PSP+ + K+    YV +  P PT
Sbjct: 57  PPTYSPAP-EVEYKSPPPPYVYSSPPPPTYSPSPKVEYKSPPPPYVYSSPPPPT 109



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 240 SLPPSMRYHPSPRWKLKT*SKTYVLARLPVPT 335
           S PP   Y PSP+ + K+    YV +  P PT
Sbjct: 103 SSPPPPTYSPSPKVEYKSPPPPYVYSSPPPPT 134



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 240 SLPPSMRYHPSPRWKLKT*SKTYVLARLPVPT 335
           S PP   Y PSP+ + K+    YV +  P PT
Sbjct: 128 SSPPPPTYSPSPKVEYKSPPPPYVYSSPPPPT 159



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 240 SLPPSMRYHPSPRWKLKT*SKTYVLARLPVPT 335
           S PP   Y PSP+ + K+    YV +  P PT
Sbjct: 153 SSPPPPTYSPSPKVEYKSPPPPYVYSSPPPPT 184



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 240 SLPPSMRYHPSPRWKLKT*SKTYVLARLPVPT 335
           S PP   Y PSP+ + K+    YV +  P PT
Sbjct: 328 SSPPPPTYSPSPKVEYKSPPPPYVYSSPPPPT 359



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 240 SLPPSMRYHPSPRWKLKT*SKTYVLARLPVPT 335
           S PP   Y PSP+ + K+    YV +  P PT
Sbjct: 353 SSPPPPTYSPSPKVEYKSPPPPYVYSSPPPPT 384



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 240 SLPPSMRYHPSPRWKLKT*SKTYVLARLPVPT 335
           S PP   Y PSP+ + K+    YV +  P PT
Sbjct: 378 SSPPPPTYSPSPKVEYKSPPPPYVYSSPPPPT 409


>At1g09090.2 68414.m01015 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 843

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -1

Query: 381 TMSWTGRSLITRLDIP---SEPGALRGRRSLIKSLTSIGVTGGNASRVARRLCVLPHCLL 211
           T  WTG +++  + +    ++    R R +L KSL  +  TG NA   +  L V+ + LL
Sbjct: 437 TDGWTGVTMVVLMLVAYVLAQSWFRRNRANLPKSLKRL--TGFNAFWYSHHLFVIVYVLL 494

Query: 210 ILH 202
           I+H
Sbjct: 495 IVH 497


>At1g09090.1 68414.m01014 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 622

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -1

Query: 381 TMSWTGRSLITRLDIP---SEPGALRGRRSLIKSLTSIGVTGGNASRVARRLCVLPHCLL 211
           T  WTG +++  + +    ++    R R +L KSL  +  TG NA   +  L V+ + LL
Sbjct: 437 TDGWTGVTMVVLMLVAYVLAQSWFRRNRANLPKSLKRL--TGFNAFWYSHHLFVIVYVLL 494

Query: 210 ILH 202
           I+H
Sbjct: 495 IVH 497


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,194,327
Number of Sequences: 28952
Number of extensions: 316294
Number of successful extensions: 1108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)