Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0332
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.48 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.1  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    27   1.9  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   3.4  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    26   4.5  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    26   5.9  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    26   5.9  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   7.9  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 17/48 (35%), Positives = 30/48 (62%)
 Frame = +2

Query: 59  TSKSTKWSHSLTISTSMPSTLSTSVKKNSRALLTVTRSVNHVLTTSRS 202
           +S ST  + S + STS PS++S+S+  +S  L + T S + ++ +S S
Sbjct: 595 SSSSTSSTFS-SASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSS 641


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +2

Query: 56  PTSKSTKWSHSLTISTSMPSTLSTSVKKNSRALLTVTRSVNHVLTTSRS 202
           PTS S+  S S + S+S  STLS+S   +S +  +   S +  +++S S
Sbjct: 300 PTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSS 348


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
 Frame = +3

Query: 336 FVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIYKLLDQGKIPTDMF--NSSDTMPSRLML 509
           F+  VNP ++  TR +       ++SLPMA  Y   +   +  D F     D +     L
Sbjct: 258 FISSVNPLEADDTRETLSEGALVQESLPMAYSYSDTNL-VVSRDSFTLTGDDNLFPEGGL 316

Query: 510 LRVHTMDS-PSSCLYSSIRMKPRPKESEPIQVCCSGATKP 626
              +T+D    S L SS   K     +  + +  +G  KP
Sbjct: 317 RPANTIDGIVRSSLSSSSLSKDTEPSTVDMHIAFTGLNKP 356


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +3

Query: 330 DWFVQKVNPGQSQITRSSTDFAFFKEDSLPMAEI 431
           DW + K+ P   ++T    D  FF  +  P   +
Sbjct: 82  DWVIVKLGPSSGRVTGCEIDTTFFNGNHAPEVSV 115


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 570 PRPKESEPIQVCCSGATKPISVIHSIAPVLSSVTFK 677
           P P E E I +  + + KP+S++ S    L ++ FK
Sbjct: 350 PNPSEVENIALNAADSEKPVSLVPSSEKPLVALAFK 385


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +3

Query: 255 FLGPKYDENGFPFSLEDNWMNFY----ELDWFVQKVNPGQSQI 371
           FL P    +G  +  +D W++FY    E DW     N G + +
Sbjct: 341 FLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = -2

Query: 451 PWSKSL*ISAIGKE-----SSLKNAKSVDERVI*DWPGLTFCTNQSSS*KFIQLSSRLKG 287
           PWS++   S  G       +S+K+A  +  + I +   L    N +   KF       KG
Sbjct: 5   PWSRNFLCSCRGFSVCTPYASIKSASELALKNISELQALQKIQNHTEKLKFFSSKLHNKG 64

Query: 286 KPFSSYLG 263
           +PF+  LG
Sbjct: 65  EPFTLQLG 72


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +3

Query: 375 RSSTDFAFFKEDSLPMAEIYKLLDQGKIPTDMFNSSDTMPSRLMLLRVHTMDSPS 539
           +S+TD +  KED   M++++K+  + K         + +  RLM + +    +P+
Sbjct: 23  KSTTDESSSKEDYSTMSDLWKMFSKAKSELSNGRRVENLTWRLMSINLQKNLTPN 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,817
Number of Sequences: 5004
Number of extensions: 57456
Number of successful extensions: 216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)