Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0332
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790 30 1.5
04_04_0500 - 25677767-25680850 29 3.5
09_01_0144 - 2158924-2158962,2159180-2159315,2159393-2159499,215... 29 4.6
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 29 4.6
08_02_1430 - 27048055-27048408,27049674-27049841,27049927-270500... 28 6.1
03_06_0354 - 33333634-33333840,33334106-33334213,33335384-333355... 28 6.1
03_05_0787 + 27696347-27696708,27696851-27696857,27697066-276973... 28 6.1
02_05_1332 + 35758657-35758728,35758959-35760689 28 8.1
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 28 8.1
01_01_1170 - 9318332-9318461,9318551-9318613,9318694-9318744,931... 28 8.1
>02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790
Length = 192
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Frame = +1
Query: 37 FVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSK--EELKSSPHGYKVR-QPRLNHKPFTV 207
F G+ S + +D+ V +FDH D D +++++ E+L KV+ L K F+
Sbjct: 72 FCGVGSSRIYLDEKVDWFDHCDTDTWSSLWLDDFIEQLGYDNSERKVKVYWLLPGKTFSD 131
Query: 208 TI-DIKSDVXTNAVVKISLDLNTMRTAFPSA 297
+ I D TN++V + L + R P A
Sbjct: 132 GLRRINFDASTNSMVALVPRLRSSRPELPMA 162
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 586 DSLGLGFIRIDEYKQLEGESIVCTLRSISLEGIVSEELNMSVGI 455
DS+ + + + LE E VC L+ + L GI ++++ S I
Sbjct: 491 DSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAI 534
>09_01_0144 -
2158924-2158962,2159180-2159315,2159393-2159499,
2159594-2160055,2162755-2162836,2164222-2164346,
2164555-2164623,2164935-2165056,2165823-2165856
Length = 391
Score = 28.7 bits (61), Expect = 4.6
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = +3
Query: 348 VNPGQSQITRSSTDFAFFKEDSLPMAEIYKLLDQGKIPTDMFNSSDTMPSRLMLL----- 512
VNP QI +TD + DSL + +L P ++ SRL L
Sbjct: 152 VNPSTMQIIAKATDQTL-QHDSLKSNKCAELNSDS--PFSSLEVTEKKGSRLFLSNSNVS 208
Query: 513 RVHTMDSPSSCLYSSIRMKPRPKESEPIQVCCSG 614
+ ++++ +SCL MKPRP E + + C G
Sbjct: 209 KCNSLNMEASCLNPWGWMKPRPSEQKSLP--CEG 240
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -2
Query: 595 MGSDSLGLG-FIRIDEYKQLEGESIVCTLRSISLEGIVSEELNMSVGIFPW 446
M D +G G + R+ + LE V ++ +SLE I E+LN+ + F W
Sbjct: 21 MLGDEIGKGAYGRVYKGLDLENGDFVA-IKQVSLENIPQEDLNIIMSTFMW 70
>08_02_1430 -
27048055-27048408,27049674-27049841,27049927-27050042,
27050153-27050305,27050850-27050993,27051052-27051211,
27051332-27051970
Length = 577
Score = 28.3 bits (60), Expect = 6.1
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +1
Query: 16 YTQEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPH--GYKVRQPRLN 189
+ ++AL V + +VDK V F H D D + S +EL H G V +P +
Sbjct: 398 FKKKALGVVARNLPGEEVDKYVQMFHHMDKD--KNGHLSLDELLEGLHINGQPVPEPEIR 455
Query: 190 HKPFTVTIDIKSDVXTNAVVKISLDLNTM 276
D + + V +S+ L M
Sbjct: 456 MLLEAADTDGNGTLDCDEFVTVSVHLKKM 484
>03_06_0354 -
33333634-33333840,33334106-33334213,33335384-33335557,
33335637-33335765,33335858-33336145,33336257-33336489,
33336607-33337435
Length = 655
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 204 SERLVV-KTWLTDLVTVRRALEFFFTEVDSVEGIEVEMVKECDHFVDFDVGNF 49
+ER+ V KTW++ + FF ++S + + E+ KE + F D + F
Sbjct: 423 AERMAVRKTWMSAAQKSSNVVARFFVALNSRKEVNAELKKEAEFFGDIVIVPF 475
>03_05_0787 +
27696347-27696708,27696851-27696857,27697066-27697371,
27697454-27697873
Length = 364
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 56 PTSKSTKWSHSLTISTSMPS-TLSTSVKKNSRALLTVTRSV 175
P+S TK SHS+ ++SM S T S S K S A+ V + +
Sbjct: 294 PSSIGTKRSHSMRSTSSMRSTTTSLSKKLKSPAVCVVVKEI 334
>02_05_1332 + 35758657-35758728,35758959-35760689
Length = 600
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -1
Query: 608 TTDLNGL*LLRSRLHTDRRIQTAGRGIHRMYP*EHQPRRHSVRGVEHVSRN 456
++DL L + RL+ R Q + R H +YP + + RH RG E S +
Sbjct: 278 SSDLRQRLLKQRRLNNPRSGQVSDR--HNVYPEDERHDRHRQRGEEQASND 326
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 13 PYTQEALHFVGLKISDVKVDKMVTFF 90
PYTQ AL FV L + K+D+ T F
Sbjct: 506 PYTQSALLFVDLGMDVYKIDRACTKF 531
>01_01_1170 -
9318332-9318461,9318551-9318613,9318694-9318744,
9318837-9318921,9319005-9319068,9319139-9319340,
9319808-9320502
Length = 429
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/90 (25%), Positives = 43/90 (47%)
Frame = +3
Query: 282 GFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIYKLLDQGKIP 461
GF F+ + + L++ V++++ G +T + ++ SL + + L+D K
Sbjct: 159 GFSFTHASPVLQNFTLNYAVRRMDLGGKALTNYLKELISYR--SLNVMDETLLIDDAKEK 216
Query: 462 TDMFNSSDTMPSRLMLLRVHTMDSPSSCLY 551
F S D +P L L R+ + D+P C Y
Sbjct: 217 L-CFVSLD-VPGDLRLARLSSNDNPFRCSY 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,747,999
Number of Sequences: 37544
Number of extensions: 360659
Number of successful extensions: 980
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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