Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0332
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 31 0.67
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40) 31 0.89
SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019) 29 3.6
SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7) 29 3.6
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25) 29 3.6
SB_6973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_42047| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 31.5 bits (68), Expect = 0.67
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +3
Query: 264 PKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIYKLL 443
PK ++ P S+ D WM+ +E FV+K+N Q+ + SS F K+ + + +I L+
Sbjct: 257 PKSSQDALPVSITDRWMSQHE---FVEKLNM-QAVLCASSHTDEFVKDFLITLEKIPVLI 312
Query: 444 DQ 449
+
Sbjct: 313 HE 314
>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
Length = 2057
Score = 31.1 bits (67), Expect = 0.89
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 22 QEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPHGYKVRQPRLNHK 195
QE F+ +K+SD ++ FDFD+ + V +KE K S ++PR K
Sbjct: 640 QENEEFLDIKVSDESLETPQFQVTRFDFDSNSEVEKNKESSKRSLREKAAKRPRPRRK 697
>SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
Length = 736
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +3
Query: 324 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 485
E WF Q +N +S + R +T F D +P+ +I + +D+ +IPTD++ SS
Sbjct: 404 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 463
Query: 486 TMPSRLMLLRVHTMDSP 536
L +++ P
Sbjct: 464 EAGIALQSIKLRKAGGP 480
>SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)
Length = 359
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +3
Query: 324 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 485
E WF Q +N +S + R +T F D +P+ +I + +D+ +IPTD++ SS
Sbjct: 255 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 314
Query: 486 TMPSRLMLLRVHTMDSP 536
L +++ P
Sbjct: 315 EAGIALQSIKLRKAGGP 331
>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
Length = 867
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +3
Query: 324 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 485
E WF Q +N +S + R +T F D +P+ +I + +D+ +IPTD++ SS
Sbjct: 490 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 549
Query: 486 TMPSRLMLLRVHTMDSP 536
L +++ P
Sbjct: 550 EAGIALQSIKLRKAGGP 566
>SB_6973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 561 RMKPRPKESEPIQVCCSGATKPISVIHSIAPVLSSVTFKQ 680
R+ P PK +EP CC +P+S++ +++ ++ + Q
Sbjct: 3 RISPIPKVNEP---CCDADLRPVSILPTLSKLMERLVLHQ 39
>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3474
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -2
Query: 613 PEQQT*MGSDSLGLGFIRIDEYKQLEGESIVCTLRSISLEG 491
P Q+ + + S GF+ + Y LEGES+V TL+ S +G
Sbjct: 1453 PSLQSSLTTASNRRGFV-LKPYSLLEGESVVITLKVSSADG 1492
>SB_42047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 715
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +3
Query: 399 FKEDSLPMAEIYKLLDQGKIPTDMFNSSDTMPSRLMLLRVHTMDSPSSCLYSSIRMKPRP 578
++E M E+ K++ + I +++ T ++++V DS S + PRP
Sbjct: 258 YEEADTEMKELQKVIRESSISSEILPR--TQQKEDLIIKVCVPDSLDRISVSLVCQAPRP 315
Query: 579 KESEPIQVCCS 611
E+ + V CS
Sbjct: 316 LENVFLSVICS 326
>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1050
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 56 PTSKSTKWSHSLTISTSMPSTLSTSVKKNSRALLTVTRSV 175
P+S+ T S +L T LSTS+ + L TV RSV
Sbjct: 848 PSSRGTNNSFALLNRTEAALALSTSILATANKLHTVNRSV 887
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,902,176
Number of Sequences: 59808
Number of extensions: 427814
Number of successful extensions: 1127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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