Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0332
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83125-7|CAB05619.1| 407|Caenorhabditis elegans Hypothetical pr... 29 2.4
AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous... 29 2.4
AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transien... 29 2.4
AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 29 2.4
Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical pr... 29 3.2
L10990-4|ABB88238.1| 438|Caenorhabditis elegans Hypothetical pr... 29 3.2
L10990-3|ABB88237.1| 505|Caenorhabditis elegans Hypothetical pr... 29 3.2
AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRN... 29 3.2
AF038615-2|AAB94145.1| 782|Caenorhabditis elegans Hypothetical ... 28 5.5
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 7.3
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 7.3
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 7.3
Z68213-2|CAA92437.1| 388|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 27 9.6
X64963-1|CAA46126.1| 388|Caenorhabditis elegans protein ( C.ele... 27 9.6
X64962-1|CAA46125.1| 388|Caenorhabditis elegans sex determinati... 27 9.6
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 27 9.6
>Z83125-7|CAB05619.1| 407|Caenorhabditis elegans Hypothetical
protein T15D6.9 protein.
Length = 407
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 1 RHQVPYTQEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSK 135
R P+ + LH GL +S +DK+ ++F+F AFNT + K
Sbjct: 116 REFYPHHKYILH--GLNLSAAYIDKLPRNDENFEFRAFNTSTYPK 158
>AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous
cation channel proteinprotein.
Length = 816
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 679 CLKVTEERTGAIEWITEMGLVAPEQQT*MGSDSLGLGFIRIDEYKQLEGESIVC 518
C+K+ ++ G + ++ PE DSL L RI+ Y+ L S++C
Sbjct: 158 CIKLFLDKKGTVPHPHDVRCSCPECYVAREEDSLRLSRSRINAYRALTSPSLIC 211
>AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform a
protein.
Length = 816
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 679 CLKVTEERTGAIEWITEMGLVAPEQQT*MGSDSLGLGFIRIDEYKQLEGESIVC 518
C+K+ ++ G + ++ PE DSL L RI+ Y+ L S++C
Sbjct: 158 CIKLFLDKKGTVPHPHDVRCSCPECYVAREEDSLRLSRSRINAYRALTSPSLIC 211
>AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform b
protein.
Length = 886
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 679 CLKVTEERTGAIEWITEMGLVAPEQQT*MGSDSLGLGFIRIDEYKQLEGESIVC 518
C+K+ ++ G + ++ PE DSL L RI+ Y+ L S++C
Sbjct: 158 CIKLFLDKKGTVPHPHDVRCSCPECYVAREEDSLRLSRSRINAYRALTSPSLIC 211
>Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical
protein C25A1.7 protein.
Length = 970
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 80 SHSLTISTSMPSTLSTSVKKNSRALLTVTRSVNHVLTTSRS 202
S+SLT +S ++ T KK S L + +NH+ +T RS
Sbjct: 20 SNSLTHLSSSSTSSETPNKKKSTVFLPSSSFINHIKSTERS 60
>L10990-4|ABB88238.1| 438|Caenorhabditis elegans Hypothetical
protein C30A5.10b protein.
Length = 438
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 59 TSKSTKWSHSLTISTSMPSTLST---SVKKNSRALLTVTRS 172
T ST + + T +T+MP T T SVKKN+ L T ++S
Sbjct: 88 TFPSTTTASTTTSTTTMPPTYQTTTKSVKKNTETLWTTSKS 128
>L10990-3|ABB88237.1| 505|Caenorhabditis elegans Hypothetical
protein C30A5.10a protein.
Length = 505
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 59 TSKSTKWSHSLTISTSMPSTLST---SVKKNSRALLTVTRS 172
T ST + + T +T+MP T T SVKKN+ L T ++S
Sbjct: 88 TFPSTTTASTTTSTTTMPPTYQTTTKSVKKNTETLWTTSKS 128
>AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRNA
synthetase (mitochondrial)protein.
Length = 972
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 80 SHSLTISTSMPSTLSTSVKKNSRALLTVTRSVNHVLTTSRS 202
S+SLT +S ++ T KK S L + +NH+ +T RS
Sbjct: 20 SNSLTHLSSSSTSSETPNKKKSTVFLPSSSFINHIKSTERS 60
>AF038615-2|AAB94145.1| 782|Caenorhabditis elegans Hypothetical
protein R02D3.4 protein.
Length = 782
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +1
Query: 160 GYKVRQPRLNHKPFTVTIDIKSDVXTNAVVKISLDLNTMRTAF 288
G+K ++P + KP + +IK D+ +N + + + +R F
Sbjct: 683 GFKKKKPEVEEKPIVMAKEIKVDIFSNMCDMLEVKESKIRREF 725
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 7.3
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 147 LEFFFTEVDSVEGIEVEMVKECDHFV 70
+E FF++ + G+E++++ EC +V
Sbjct: 4718 VELFFSQAEVFSGLELDLLMECSEYV 4743
Score = 27.9 bits (59), Expect = 7.3
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 147 LEFFFTEVDSVEGIEVEMVKECDHFV 70
+E FF++ + G+E++++ EC +V
Sbjct: 4879 VELFFSQAEVFSGLELDLLMECSEYV 4904
Score = 27.9 bits (59), Expect = 7.3
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 147 LEFFFTEVDSVEGIEVEMVKECDHFV 70
+E FF++ + G+E++++ EC +V
Sbjct: 6161 VELFFSQAEVFSGLELDLLMECSEYV 6186
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 147 LEFFFTEVDSVEGIEVEMVKECDHFV 70
+E FF++ + G+E++++ EC +V
Sbjct: 5235 VELFFSKAEVFSGLELDLLMECSEYV 5260
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 7.3
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 147 LEFFFTEVDSVEGIEVEMVKECDHFV 70
+E FF++ + G+E++++ EC +V
Sbjct: 4718 VELFFSQAEVFSGLELDLLMECSEYV 4743
Score = 27.9 bits (59), Expect = 7.3
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 147 LEFFFTEVDSVEGIEVEMVKECDHFV 70
+E FF++ + G+E++++ EC +V
Sbjct: 4879 VELFFSQAEVFSGLELDLLMECSEYV 4904
Score = 27.9 bits (59), Expect = 7.3
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 147 LEFFFTEVDSVEGIEVEMVKECDHFV 70
+E FF++ + G+E++++ EC +V
Sbjct: 6181 VELFFSQAEVFSGLELDLLMECSEYV 6206
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 147 LEFFFTEVDSVEGIEVEMVKECDHFV 70
+E FF++ + G+E++++ EC +V
Sbjct: 5235 VELFFSKAEVFSGLELDLLMECSEYV 5260
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 7.3
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 147 LEFFFTEVDSVEGIEVEMVKECDHFV 70
+E FF++ + G+E++++ EC +V
Sbjct: 4718 VELFFSQAEVFSGLELDLLMECSEYV 4743
Score = 27.9 bits (59), Expect = 7.3
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 147 LEFFFTEVDSVEGIEVEMVKECDHFV 70
+E FF++ + G+E++++ EC +V
Sbjct: 4879 VELFFSQAEVFSGLELDLLMECSEYV 4904
Score = 27.9 bits (59), Expect = 7.3
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 147 LEFFFTEVDSVEGIEVEMVKECDHFV 70
+E FF++ + G+E++++ EC +V
Sbjct: 6181 VELFFSQAEVFSGLELDLLMECSEYV 6206
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 147 LEFFFTEVDSVEGIEVEMVKECDHFV 70
+E FF++ + G+E++++ EC +V
Sbjct: 5235 VELFFSKAEVFSGLELDLLMECSEYV 5260
>Z68213-2|CAA92437.1| 388|Caenorhabditis elegans Hypothetical
protein C01F6.4 protein.
Length = 388
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/90 (16%), Positives = 41/90 (45%)
Frame = -2
Query: 646 IEWITEMGLVAPEQQT*MGSDSLGLGFIRIDEYKQLEGESIVCTLRSISLEGIVSEELNM 467
++W+ ++ ++ T + D G G + E+ +L E++ + ++++ L +
Sbjct: 271 LDWLAKLCILEIVYHTTIWCDITGFGGLPRIEHYRLAMENVEDIIFDLAIDDFSISRLQL 330
Query: 466 SVGIFPWSKSL*ISAIGKESSLKNAKSVDE 377
+ F S+ + G ++K K ++E
Sbjct: 331 QISPFEISRYSPLDVSGYYETIKRKKDIEE 360
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 56 PTSKSTKWSHSLTISTSMPSTLSTSVKKNSRALLTVTRSVNHVLTTSRS 202
PTS ST + +++ STS PST +T ++ T + S + TT +S
Sbjct: 297 PTSTSTVTT-AMSTSTSTPSTSTTIESTSTTFTSTASTSTSSTSTTQQS 344
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 56 PTSKSTKWSHSLTISTSMPSTLSTSVKKNSRALLTVTRSVNHVLTTSRS 202
PTS ST + +++ STS PST +T ++ T + S + TT +S
Sbjct: 297 PTSTSTVTT-AMSTSTSTPSTSTTIESTSTTFTSTASTSTSSTSTTQQS 344
>X64963-1|CAA46126.1| 388|Caenorhabditis elegans protein (
C.elegans gene fem-3. ).
Length = 388
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/90 (16%), Positives = 41/90 (45%)
Frame = -2
Query: 646 IEWITEMGLVAPEQQT*MGSDSLGLGFIRIDEYKQLEGESIVCTLRSISLEGIVSEELNM 467
++W+ ++ ++ T + D G G + E+ +L E++ + ++++ L +
Sbjct: 271 LDWLAKLCILEIVYHTTIWCDITGFGGLPRIEHYRLAMENVEDIIFDLAIDDFSISRLQL 330
Query: 466 SVGIFPWSKSL*ISAIGKESSLKNAKSVDE 377
+ F S+ + G ++K K ++E
Sbjct: 331 QISPFEISRYSPLDVSGYYETIKRKKDIEE 360
>X64962-1|CAA46125.1| 388|Caenorhabditis elegans sex determination
protein protein.
Length = 388
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/90 (16%), Positives = 41/90 (45%)
Frame = -2
Query: 646 IEWITEMGLVAPEQQT*MGSDSLGLGFIRIDEYKQLEGESIVCTLRSISLEGIVSEELNM 467
++W+ ++ ++ T + D G G + E+ +L E++ + ++++ L +
Sbjct: 271 LDWLAKLCILEIVYHTTIWCDITGFGGLPRIEHYRLAMENVEDIIFDLAIDDFSISRLQL 330
Query: 466 SVGIFPWSKSL*ISAIGKESSLKNAKSVDE 377
+ F S+ + G ++K K ++E
Sbjct: 331 QISPFEISRYSPLDVSGYYETIKRKKDIEE 360
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +2
Query: 65 KSTKWSHSLTISTSMPSTLSTSVKKNSRALLTVTRSVNHVLTTS 196
+S++ H+ T S ++PS+ +++V+K + L TR +TT+
Sbjct: 221 RSSESRHNETTSITLPSSFNSTVRKLTLKELMTTRDTMPKITTA 264
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,358,211
Number of Sequences: 27780
Number of extensions: 316848
Number of successful extensions: 930
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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