Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0332
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49060.1 68418.m06070 DNAJ heat shock N-terminal domain-conta...    30   1.3  
At1g74800.1 68414.m08666 galactosyltransferase family protein co...    30   1.3  
At4g04710.1 68417.m00692 calcium-dependent protein kinase, putat...    29   2.2  
At4g01470.1 68417.m00190 major intrinsic family protein / MIP fa...    29   2.9  
At4g11970.2 68417.m01906 YT521-B-like family protein contains Pf...    28   5.1  
At4g11970.1 68417.m01905 YT521-B-like family protein contains Pf...    28   5.1  
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri...    28   5.1  
At5g38640.1 68418.m04673 eukaryotic translation initiation facto...    28   6.8  
At2g39440.1 68415.m04841 expressed protein                             28   6.8  
At3g13235.1 68416.m01666 ubiquitin family protein contains INTER...    27   8.9  
At2g41630.1 68415.m05144 transcription initiation factor IIB-1 /...    27   8.9  

>At5g49060.1 68418.m06070 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|Q9QYI4
           DnaJ homolog subfamily B member 12 {Mus musculus};
           contains Pfam profile PF00226: DnaJ domain
          Length = 354

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 85  FFDHFD-FDAFNTVYFSKEELKSSPHGYKVRQPR 183
           F D FD  + F TV+  + E+  + H Y+ RQPR
Sbjct: 189 FDDEFDPEEIFRTVFGQQREVFRASHAYRTRQPR 222


>At1g74800.1 68414.m08666 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 672

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -3

Query: 204 SERLVV-KTWLTD-LVTVRRALEFFFTEVDSVEGIEVEMVKECDHFVD 67
           SER+ V K+W+   L+T  + +  FF  +   + + VE+ KE ++F D
Sbjct: 437 SERMAVRKSWMQHVLITSAKVVARFFVALHGRKEVNVELKKEAEYFGD 484


>At4g04710.1 68417.m00692 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Nicotiana tabacum] gi|3283996|gb|AAC25423;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 575

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/84 (17%), Positives = 40/84 (47%)
 Frame = +1

Query: 28  ALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPHGYKVRQPRLNHKPFTV 207
           AL  +   +S+ ++  + T F++ D D   ++ + + ++  + HG K+ +  +      V
Sbjct: 321 ALKVIAEGLSEEEIKGLKTMFENMDMDKSGSITYEELKMGLNRHGSKLSETEVKQLMEAV 380

Query: 208 TIDIKSDVXTNAVVKISLDLNTMR 279
           + D+  +   + +  IS  ++  R
Sbjct: 381 SADVDGNGTIDYIEFISATMHRHR 404


>At4g01470.1 68417.m00190 major intrinsic family protein / MIP
           family protein contains Pfam profile: MIP PF00230
          Length = 252

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 544 QLEGESIVCTLRSISLEGIVSEELNMSVGIFPWS 443
           QL G  + C L  +S  G+ +   ++S G+ PW+
Sbjct: 110 QLLGAVVACLLLKVSTGGMETAAFSLSYGVTPWN 143


>At4g11970.2 68417.m01906 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 359

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 145 KSSPHG--YKVRQPRLNHKPFTVTIDIKSDVXTNAVVKISLD 264
           K++P G  +KV+  RL+  PF  T+ +K+ +     VKIS D
Sbjct: 150 KNNPWGRSFKVKWLRLSELPFQKTLHLKNPLNDYKPVKISRD 191


>At4g11970.1 68417.m01905 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 444

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 145 KSSPHG--YKVRQPRLNHKPFTVTIDIKSDVXTNAVVKISLD 264
           K++P G  +KV+  RL+  PF  T+ +K+ +     VKIS D
Sbjct: 150 KNNPWGRSFKVKWLRLSELPFQKTLHLKNPLNDYKPVKISRD 191


>At2g17250.1 68415.m01992 expressed protein weak similarity to
           Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
           [Saccharomyces cerevisiae]
          Length = 577

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 107 MPSTLSTSVKKNSRALLTVTRSVNHVLTTSRS 202
           M S LS   KKN +  L   +S+ H L TSRS
Sbjct: 1   MASILSKKQKKNEKYTLKELKSLGHDLLTSRS 32


>At5g38640.1 68418.m04673 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           SP|P41111 Translation initiation factor eIF-2B delta
           subunit (eIF-2B GDP-GTP exchange factor) {Oryctolagus
           cuniculus}; contains Pfam profile PF01008: Initiation
           factor 2 subunit family
          Length = 642

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 456 IPTDMFNSSDTMPSRLMLL-RVHTMDSPSSCLYSSIRMKP 572
           IP    NSSDT P R+ +     +  SPSS  YSS R  P
Sbjct: 62  IPPPRLNSSDTFPLRVAVAGAAASAVSPSSFSYSSRRDFP 101


>At2g39440.1 68415.m04841 expressed protein
          Length = 773

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = -2

Query: 565 IRIDEYKQLEG--ESIVCTLRSISLEGIVSE 479
           I IDE+ +LE   ES+VC L S+ ++ ++SE
Sbjct: 738 IDIDEWLELEADDESVVCELESMIVDELLSE 768


>At3g13235.1 68416.m01666 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 414

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +3

Query: 396 FFKEDSLPMAEIYKLLDQGKIPTDMFNSSDTMPSRLMLLRVHTMDSPSS 542
           F +E  +P     + LD+ ++P D  +S  T+PS     + +T+ +P+S
Sbjct: 318 FLQEKDIPS----RFLDEERVPNDASSSGATVPSGFTEKKNNTVANPTS 362


>At2g41630.1 68415.m05144 transcription initiation factor IIB-1 /
           general transcription factor TFIIB-1 (TFIIB1) identical
           to transcription initiation factor IIB-1 (TFIIB1)
           SP:P48512 from [Arabidopsis thaliana]
          Length = 312

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 537 SSCLYSSIRMKPRPKESEPIQVCCSGATK 623
           ++CLY + R + +P+  + I V  +GATK
Sbjct: 152 AACLYIACRQEDKPRTIKEICVIANGATK 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,604,574
Number of Sequences: 28952
Number of extensions: 301355
Number of successful extensions: 861
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)