Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0331
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    31   0.21 
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   2.1  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   3.4  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    26   4.5  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    26   4.5  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   7.8  
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    25   7.8  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   7.8  

>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 600 ISPHFHNGHSIFESALNLVYSCSHP*QFPVNFNRALAHVVM 478
           + PH+HN    F   L LV+S S   +FP+  N+ L   +M
Sbjct: 462 VIPHYHNKLIDFSQVLQLVFSASE--KFPIQENQPLPEQLM 500


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 23.0 bits (47), Expect(2) = 2.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 273 DVNVTTRMTSTSRGSYRKTRRR 208
           ++N+  RMTSTS   Y K  ++
Sbjct: 232 NLNINARMTSTSSKPYAKENQQ 253



 Score = 22.6 bits (46), Expect(2) = 2.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 138 MSADPPTNSRAFPSNGSPGGPFSLSASS 55
           M    P    +   NGSP GP+S S+++
Sbjct: 292 MPKTTPLRGTSTVMNGSPIGPYSSSSNA 319


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 307 WLGNGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVV 441
           W+GNG    T   + +  + I  T HL    S +D  + N+  V+
Sbjct: 67  WIGNGHAAETTLYFPASHQQIQLTLHLENQNSIVDSIHINADTVL 111


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 122 GGSADIFRNIVQKSADYD 175
           GG   +FR +  KS+DYD
Sbjct: 216 GGGRKLFRKVANKSSDYD 233


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 354 RPPFLTSTDKKTVSEPWFEETVFLSFIDVNVTTRMTSTSRGSYRKTRR 211
           RPPF+T  D  T    W   T    F+  N+T  +T+ S G Y  T++
Sbjct: 225 RPPFITQCDTATGDNYW-AGTYMGDFVS-NITNVLTN-STGHYCTTQQ 269


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 278 KLRNTVSSNHGSETVFLSVLVKNGGL 355
           K+++ ++S HG  TV  S+L+ N G+
Sbjct: 55  KVKDYIAS-HGGHTVITSILIANNGI 79


>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 448 LKKEASNFDCHDYMSECTVEI 510
           LK+  S   C D+  ECT+EI
Sbjct: 9   LKQIQSTLRCIDFSKECTIEI 29


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 366 YRPHIPSERFEEFHRLIQRQLKSCCGQT*KGS 461
           +R  +PS+   + + LI R+  +CC    KG+
Sbjct: 392 HRSALPSQDHWKVYELITRRFLACCSDNAKGA 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,916
Number of Sequences: 5004
Number of extensions: 56834
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)