Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0331
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_6244| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_9611| Best HMM Match : p450 (HMM E-Value=1.1e-05) 36 0.023
SB_51609| Best HMM Match : p450 (HMM E-Value=0) 35 0.054
SB_1725| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_15628| Best HMM Match : p450 (HMM E-Value=1.20512e-43) 32 0.50
SB_21442| Best HMM Match : p450 (HMM E-Value=0) 31 1.2
SB_57069| Best HMM Match : GETHR (HMM E-Value=1.7e-10) 30 1.5
SB_15630| Best HMM Match : p450 (HMM E-Value=0) 30 1.5
SB_588| Best HMM Match : p450 (HMM E-Value=0.17) 30 2.0
SB_1809| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_42553| Best HMM Match : VLPT (HMM E-Value=1) 29 2.7
SB_1738| Best HMM Match : p450 (HMM E-Value=0) 29 2.7
SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_51175| Best HMM Match : p450 (HMM E-Value=0) 29 4.7
SB_35141| Best HMM Match : p450 (HMM E-Value=0) 29 4.7
SB_8405| Best HMM Match : PAN (HMM E-Value=0.044) 29 4.7
SB_14189| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_690| Best HMM Match : GCS (HMM E-Value=0) 28 6.2
SB_2334| Best HMM Match : p450 (HMM E-Value=0) 28 6.2
SB_22117| Best HMM Match : p450 (HMM E-Value=1.1e-09) 28 8.2
>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1741
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Frame = +1
Query: 268 YIDKAEEYRFFKPWLGNGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDK 447
+ D+ + +P L + L I G++W+ R ++PTF + +KS + L N ++ K
Sbjct: 120 FYDRPVPFELPEP-LDSFLSIVRGERWKRIRNTLSPTFTAHNMKSMVPLINVPCDTLMKK 178
Query: 448 LKKEA---SNFDCHDYMSECTVEIYWKLLW 528
++K A FD Y TVEI +++
Sbjct: 179 IEKAAETGETFDIVKYQQAVTVEIILSIVF 208
>SB_6244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +1
Query: 292 RFFKPWLGNGLLIS-TGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVD--KLKKEA 462
RFF+ LG L+ +G W+ HR+LI+P F + D+ N +R ++D +L++
Sbjct: 97 RFFQNVLGQFSLVGLSGDLWKKHRRLISPFFGRTYMTFASDIANQQTRKLIDRWRLQQPG 156
Query: 463 SNFDCHDYMSECTVEI 510
S + + TV+I
Sbjct: 157 SVIEAFSAVKNLTVDI 172
>SB_9611| Best HMM Match : p450 (HMM E-Value=1.1e-05)
Length = 278
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 298 FKPWLGNGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEASNFDC 477
F P L L +G++WR+ R ++P F + LKS + L N ++K+ + A
Sbjct: 16 FSPPLDKMLNALSGEEWRNLRHTLSPNFSAHKLKSMVPLMNKACDVYMEKITRAAETRAT 75
Query: 478 HDYM 489
D M
Sbjct: 76 IDVM 79
>SB_51609| Best HMM Match : p450 (HMM E-Value=0)
Length = 526
Score = 35.1 bits (77), Expect = 0.054
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +1
Query: 298 FKPWLGNGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEASNFDC 477
F P L L I G++WR+ R ++P F + LK + L N + K+ A +
Sbjct: 139 FSPPLDKMLTILPGEEWRNLRHALSPNFSAHKLKGMVPLMNKACDVYMKKIACAAETGET 198
Query: 478 HDYM 489
D M
Sbjct: 199 IDVM 202
>SB_1725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Frame = +1
Query: 313 GNGLLISTGQK-WRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKL---KKEASNFDCH 480
G G+L W R L+ P FH L + + FN ++DKL + D
Sbjct: 127 GRGILTEPDPSAWHKKRTLLNPAFHRKNLMNLMSPFNVICERMIDKLSLISDGKTQVDLA 186
Query: 481 DYMSECTVEIYWKL 522
D +S T+++ K+
Sbjct: 187 DELSRTTLDVIGKV 200
>SB_15628| Best HMM Match : p450 (HMM E-Value=1.20512e-43)
Length = 440
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 340 QKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEA---SNFDCHDYMSECTVEI 510
+KW R ++P F + +K + L N++ +++KL K A +F H + T++
Sbjct: 139 EKWHRIRNTLSPAFSAHKMKLMVPLINSSCDVLINKLTKVAESGESFFTHKFHQGLTMDT 198
Query: 511 YWK 519
K
Sbjct: 199 ILK 201
>SB_21442| Best HMM Match : p450 (HMM E-Value=0)
Length = 565
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +1
Query: 304 PWLGNGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLK---KEASNFD 474
P L + + ++ KW+ RK+IAP F + LK + L + + KL+ + + +
Sbjct: 121 PPLDSEMFLAKYPKWKRVRKVIAPAFSGSKLKGTVGLIEGAAERMNAKLESYSQTGESVE 180
Query: 475 CHDYMSECTVEI 510
D S C +++
Sbjct: 181 MTDLFSLCILDV 192
>SB_57069| Best HMM Match : GETHR (HMM E-Value=1.7e-10)
Length = 547
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 319 GLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEA 462
GL S + W+ R + PTF +K+ I L + + ++ KL + A
Sbjct: 126 GLFASKDEDWKRVRSTLTPTFTSGKMKTMIPLVSKSCDTLIQKLGEVA 173
>SB_15630| Best HMM Match : p450 (HMM E-Value=0)
Length = 965
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 343 KWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEA---SNFDCHDYMSECTVEIY 513
KW R ++P F + +K + L N++ +++KL K A ++F H + T++
Sbjct: 140 KWHRIRTSLSPAFSAHKMKLMVPLINSSCDVLINKLTKIADSGTSFFVHKFHQGLTMDTI 199
Query: 514 WK 519
K
Sbjct: 200 LK 201
>SB_588| Best HMM Match : p450 (HMM E-Value=0.17)
Length = 304
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 346 WRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEASN---FDCHDYMSECTVEIYW 516
W+ R +++P FH K + +FNA + KL+ AS+ D + S T+++
Sbjct: 139 WKRKRGMLSPAFHRLWFKDSMGMFNAVCDKFLVKLEGYASSGEAVDLSEMFSRVTMDVIG 198
Query: 517 KL 522
K+
Sbjct: 199 KV 200
>SB_1809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +1
Query: 289 YRFFKPWLGNGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEA 462
+R + + +G+ +T KW+ R + PTF L+ + ++DK+ K A
Sbjct: 15 FRDTRSEMRHGMFSATDDKWKRIRSTLTPTFTSGKLRQMTPKMRESCDTLMDKIGKVA 72
>SB_42553| Best HMM Match : VLPT (HMM E-Value=1)
Length = 399
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 328 ISTGQKWRSHRKLIAPTFHLNVLK 399
I TG KWR HR L+ H LK
Sbjct: 322 IVTGDKWRDHRHLLPQELHWKFLK 345
>SB_1738| Best HMM Match : p450 (HMM E-Value=0)
Length = 484
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = +1
Query: 304 PWLGNGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEASNFDCHD 483
P + +G+ + G W+ R + PTF LK + + + + + K+ A+ + D
Sbjct: 106 PPMDSGMFLGQGALWKRIRTTLTPTFSTAKLKQIVPIIDKATATLQSKMASFAATGESTD 165
>SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -2
Query: 369 DKFTMRPPFLTSTDKKTVSEPWFEETVFLSFIDVNVTTRM 250
D +T+ P+++ T ++ PW T+ F+D+N T++
Sbjct: 116 DTYTITQPWISYT----ITHPWISYTISQPFLDINTITQL 151
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 330 DKKTVSEPWFEETVFLSFIDVNVTTR 253
D T+++PW T+ F+D+N T+
Sbjct: 44 DTYTITQPWISYTITQPFLDINTITQ 69
>SB_51175| Best HMM Match : p450 (HMM E-Value=0)
Length = 408
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +1
Query: 346 WRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLK---KEASNFD-CHDYM 489
WR R + PTF LK + L + + R +V++L K+ + D C Y+
Sbjct: 40 WRRLRHFVTPTFSAVKLKQVVPLISESCRILVEQLGQACKDGKSVDVCRTYV 91
>SB_35141| Best HMM Match : p450 (HMM E-Value=0)
Length = 565
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 316 NGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEA 462
+G+ +T KW+ R + PTF L+ + ++DK+ K A
Sbjct: 125 HGMFSATDDKWKRIRSTLTPTFTSGKLRQMNPKIRESCDTLMDKIGKVA 173
>SB_8405| Best HMM Match : PAN (HMM E-Value=0.044)
Length = 387
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +3
Query: 21 TPTGECQGGGCMSLLTN*MGLQDFRYSGTPWNSSVDLLT 137
T G C GGG ++ Q F YS WNS + T
Sbjct: 168 TDLGSCGGGGWTLVMKIDGNKQTFSYSSPKWNSMAEYQT 206
>SB_14189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +1
Query: 346 WRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLK---KEASNFD-CHDYM 489
WR R ++ PTF +K + L + + R +V++L K+ + D C Y+
Sbjct: 40 WRRLRHIVTPTFSAVKIKQVVPLISESCRILVEQLGQACKDGKSVDVCRTYV 91
>SB_690| Best HMM Match : GCS (HMM E-Value=0)
Length = 560
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = -1
Query: 169 VSAFLNYVSEDVSRSTDEFQGVPE*RKSWRPI*FVSKLIQPPP*HSPVGVPEDYXP 2
++ F +V ED + +D F+ + +W+ + F +PPP +SP+G ++ P
Sbjct: 475 MTLFKEHVDEDDEQYSDHFENIQS--TNWQTMRF-----KPPPPNSPIGWRVEFRP 523
>SB_2334| Best HMM Match : p450 (HMM E-Value=0)
Length = 498
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/58 (22%), Positives = 25/58 (43%)
Frame = +1
Query: 316 NGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEASNFDCHDYM 489
+G+ +T W+ R + PTF L+ + ++DK+ K A + D +
Sbjct: 125 HGMFSATDDNWKRIRSTLTPTFTSGKLRQMTPKMRESCDTLMDKIGKVADTGESVDIL 182
>SB_22117| Best HMM Match : p450 (HMM E-Value=1.1e-09)
Length = 307
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +1
Query: 322 LLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEA 462
+ + G+ W R ++P F + +K + L N + ++ KL++ A
Sbjct: 2 MFFAEGETWHRVRTTVSPIFSAHKMKMVLPLMNNSCDIMMSKLQQAA 48
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,024,099
Number of Sequences: 59808
Number of extensions: 414462
Number of successful extensions: 1060
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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