Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0330
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    21   9.6  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   9.6  

>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 537 QD*QKLDYDCRHIHFIVQTGESTNNHTKCYL 629
           +D   + YD  ++  I+Q+   T N+  C L
Sbjct: 20  EDQYTIKYDNVNLKEILQSDRLTENYVNCLL 50



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +3

Query: 162 IYKSRFNWWK 191
           +YK++ +WWK
Sbjct: 92  LYKNKQDWWK 101


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 365 LEILAIRFTVMGFKGRELYPIN 430
           LE+L I FTV      +L+PI+
Sbjct: 3   LEVLEIYFTVANKFSGKLWPIS 24


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,456
Number of Sequences: 336
Number of extensions: 2961
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)