Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0330
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83227-2|CAB05727.1|  270|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF016677-2|AAB66146.1|  292|Caenorhabditis elegans Hypothetical ...    28   5.5  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    27   9.7  

>Z83227-2|CAB05727.1|  270|Caenorhabditis elegans Hypothetical
           protein F45B8.2 protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -1

Query: 384 LMARISSVHHAKALSNEVQVLRKKAHIV*SEPENYHILRSV*NWLKSVQAV 232
           ++ R++S  +  A+S  + +LR K H++ S          V  W KS + +
Sbjct: 89  ILERVASRSNQNAVSRVINILRSKVHLMFSSSNELPSSEDVERWKKSPETL 139


>AF016677-2|AAB66146.1|  292|Caenorhabditis elegans Hypothetical
           protein ZK1240.5 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 248 RASKLFIFYIIINILKTR-EFPPIE-PRFVNQIIADSKLKESHVHFDRFR 105
           R  K  + +I  NILK + E   IE    +N+ + + KLKE   HFDR R
Sbjct: 164 RILKRRVMHIQSNILKYKSETSVIEGAEKINEQLLNMKLKEIKDHFDRIR 213


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 450  SSFPKKSFIGYNSLPLNPITVNLMARISSVHHAKALSNEVQV 325
            +S PK SF G  S+PLN    + M++I S   +  L   V +
Sbjct: 1686 ASCPKSSFPGVWSVPLNQFYGSYMSQIDSFRRSSMLRAAVDL 1727


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,885,601
Number of Sequences: 27780
Number of extensions: 262126
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)