Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0330
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.91 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.8  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   4.8  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   4.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   4.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.5  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 149 DSKLKESHVHFDRFRTCANLNI 84
           D++++E   H D+F  CA+L +
Sbjct: 29  DAEIQELRSHLDKFLQCASLKL 50


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -1

Query: 657 DFFNENMYAVSSILCDC*WIHLFEL 583
           D+FN  + + S ++C   W++   L
Sbjct: 205 DYFNRGLLSASYLVCYGIWVYFVPL 229


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 558 YDCRHIHFIVQTGESTNNHTKCYL 629
           YD   I  I+Q G    N+ KC L
Sbjct: 25  YDDMDIDRILQNGRILTNYIKCML 48


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 558 YDCRHIHFIVQTGESTNNHTKCYL 629
           YD   I  I+Q G    N+ KC L
Sbjct: 25  YDDMDIDRILQNGRILTNYIKCML 48


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -1

Query: 657 DFFNENMYAVSSILCDC*WIHLFEL 583
           D+FN  + + S ++C   W++   L
Sbjct: 81  DYFNRGLLSASYLVCYGIWVYFVPL 105


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 632 AYIFSLKKSALKNHLYKI 685
           A I+ + +S L+N +YK+
Sbjct: 614 AVIYGIPRSTLRNKVYKL 631


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,522
Number of Sequences: 438
Number of extensions: 3267
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)