Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0330
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55400.1 68416.m06153 methionyl-tRNA synthetase / methionine-...    29   2.9  
At2g07360.1 68415.m00843 SH3 domain-containing protein contains ...    27   9.0  

>At3g55400.1 68416.m06153 methionyl-tRNA synthetase /
           methionine--tRNA ligase / MetRS (cpMetRS) identical to
           methionyl-tRNA synthetase MEtRS [Arabidopsis thaliana]
           GI:2266985
          Length = 616

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 457 NSFQFSKKIVYRV*FSSLK-SHYCKSYGQD 371
           NSF+FSKK+ Y   FSS K + YC S  Q+
Sbjct: 33  NSFRFSKKLPYYSQFSSGKRALYCTSSSQE 62


>At2g07360.1 68415.m00843 SH3 domain-containing protein contains
           Pfam profile PF00018: SH3 domain
          Length = 1196

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +3

Query: 279 GSSQVLTKQYELSFGVLE 332
           G+S++L+K YE+ FG+LE
Sbjct: 241 GNSELLSKLYEIVFGILE 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,833,754
Number of Sequences: 28952
Number of extensions: 234136
Number of successful extensions: 371
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)