Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0329
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 30 0.27
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 29 0.63
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 1.5
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.6
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 3.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 5.9
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 26 5.9
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe... 25 7.8
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 7.8
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +3
Query: 30 KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 158
K KH + + +KS + ++ K+++ NK+N +E A Q W + K+
Sbjct: 131 KKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 29.1 bits (62), Expect = 0.63
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 323 VSWKFIALWENNKVYFKILNTERNQYLVLGVGTNPNG 433
+ +K I L++NN+ KILN R V+ VGT NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 308 KTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVGTN 424
K SPKV+WK +W + K K +++ +LG G++
Sbjct: 28 KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 304 LTVAEGKSAIVAVNIITSVKARPSRLYISLMAFSAKISLNSTG 176
L + + S IVA S+K + ++LY+S+ + + LN TG
Sbjct: 230 LLIEQYPSDIVAYENFVSLKRKLTQLYVSIHDLISYVHLNYTG 272
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 54 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 146
K+ +T+ NKL+ ++ + +YAY L LQ
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 142 SRAPRTSSVIVSQLSSDLSSP-KTPLSLCTSATVS 243
S P T S + S LSS SSP T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 5.9
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = -1
Query: 418 TDSQYQILVTLSVQDLE---VDLVVLPQSNELPADFRACFVLTVAEGKSAIVAVNIITSV 248
TDS+ +L+ ++V DL+ VDL ++ D + +LT ++ + V +I
Sbjct: 2018 TDSKSFLLMGINVPDLDLQPVDLPIIYTPISSGQDVQTSALLTASDKQD---VVKLILKY 2074
Query: 247 KARPSRLYIS-LMAFSAKISLNSTGKQSRTMSLEP 146
+ P Y+S +M + + N T + S P
Sbjct: 2075 EKLPGTNYVSKVMIYPPYVIFNHTDLSIQVTSSSP 2109
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 5.9
Identities = 23/96 (23%), Positives = 44/96 (45%)
Frame = -1
Query: 310 FVLTVAEGKSAIVAVNIITSVKARPSRLYISLMAFSAKISLNSTGKQSRTMSLEPWSQS* 131
+ L V + + +V +I ++ A P IS+ + +S GKQ+ +S WS++
Sbjct: 57 YYLFVRQIYTYLVTHKVILTLIAVPVVFAISIPFIGMQTPASSHGKQTTQVSTGNWSKNA 116
Query: 130 *AYSMQFILLFRISLFTTFVMTSLFFSSYKCLLFST 23
A + F+ L+ T S+ + + LL S+
Sbjct: 117 VAARLGFL---ACGLYVTSYFFSIKNNPFALLLISS 149
>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 406 YQILVTLSVQDLEVDLVVLPQSNELPADF 320
+Q+ V ++QDL+ L PQ N L +F
Sbjct: 3 FQVRVKQNMQDLDNRLAAFPQLNSLEKNF 31
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.4 bits (53), Expect = 7.8
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Frame = +2
Query: 329 WKFIA----LWENNKVYFKILNTERNQYLVLGVGTNPN--GDHMAFGVNSVDSFRAQ-WY 487
W FI W+N +V +I+ Y G+ P +++ ++ +F A WY
Sbjct: 582 WNFIKPYTEFWDNERVEREII---AGDYFKNGLEGAPKILKSYLSEKPLAISAFGALFWY 638
Query: 488 LQPAKYDKTICS 523
L+ K DK +CS
Sbjct: 639 LRQLKLDKDMCS 650
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,355
Number of Sequences: 5004
Number of extensions: 53576
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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