Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0329
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965 32 0.49
01_01_0424 + 3200223-3200634,3200677-3200836,3200987-3201342,320... 31 1.1
09_04_0011 + 13703564-13703766,13704685-13705526,13705628-137057... 29 2.6
06_01_0151 + 1131268-1131867 29 3.5
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426... 29 3.5
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 29 4.6
06_01_1166 + 9931955-9933406 29 4.6
04_01_0036 + 436592-437572 29 4.6
01_07_0186 - 41857468-41857759,41857856-41857977,41858148-418582... 29 4.6
>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
Length = 675
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = -3
Query: 224 HKLNGVFGEDKSELNWETITDDVLGALEPKLIGVLHAVHLVVSYQFVH 81
++L G GED++ LNWET LGA G+ H +H + +FVH
Sbjct: 455 NELIGKRGEDRTPLNWETRVRIALGAAR----GIAH-IHTENNGKFVH 497
>01_01_0424 +
3200223-3200634,3200677-3200836,3200987-3201342,
3201958-3203252
Length = 740
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = -2
Query: 624 DHSTIVSPRPMRLPEVSSVLDSVQSLAVFTVVDVEQIVLSYLAGCRYHWALKLSTL 457
DH +++P M LP +++++ ++ SL V+D++ +YL G + LS+L
Sbjct: 167 DHGYLINPWQMDLPNLTALVANLSSLRSLNVIDLQ---YNYLTGPIPEYFANLSSL 219
>09_04_0011 +
13703564-13703766,13704685-13705526,13705628-13705704,
13706294-13706339,13706479-13706722,13710078-13710150,
13711119-13711235
Length = 533
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 435 TTWPSESTASIVSEPSGTCSPLNTTRQFV 521
+TWPS S + + + P SPL+ T F+
Sbjct: 221 STWPSTSPSPLAAPPGAASSPLDPTAAFL 249
>06_01_0151 + 1131268-1131867
Length = 199
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -1
Query: 310 FVLTVAEGKSAIVAVNIITSVKARPSRLYISLMAFSAKISLNSTGKQSRTMSL 152
+++ G A A+ I+TSV P+R+ S+ A IS S G Q+ ++L
Sbjct: 16 YIMAAIAGTLAASAIVIVTSVVLSPTRISFSVTGGGASIS-RSAGGQAFLLNL 67
>01_06_0319 -
28441082-28441102,28441630-28441701,28442568-28442627,
28442918-28443105,28444300-28444327,28444880-28444907,
28444942-28445163,28445238-28445409,28446224-28447468,
28447573-28447741,28447820-28448045,28449096-28449451,
28449530-28449724,28450655-28450864,28451729-28452004
Length = 1155
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -1
Query: 565 RQCSK-PCCIHGCRCRTNCLVVFSGL 491
R CSK PCCI G R T L + S L
Sbjct: 581 RPCSKKPCCIPGLRVETGNLAISSSL 606
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Frame = -2
Query: 645 SVMFGTSDHSTIVSPRP-------MRLPEVSSVLDSVQ-SLAVFTVVDVEQIVLSYLAGC 490
SV+F + S P P R E+ + D++Q S+ FT+ D+E +L+ LA C
Sbjct: 1662 SVVFFLDNGSNTALPAPNSPAYFAQRSSEIEQLRDNIQNSMNTFTLTDIEGSLLTSLAQC 1721
Query: 489 R 487
+
Sbjct: 1722 K 1722
>06_01_1166 + 9931955-9933406
Length = 483
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 511 LVVFSGLQVPLGSETIDAVDSEGHVVAV 428
+V F+GL+ PLGS D D+ VVAV
Sbjct: 98 VVAFAGLRGPLGSWARDRADTHHRVVAV 125
>04_01_0036 + 436592-437572
Length = 326
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 511 LVVFSGLQVPLGSETIDAVDSEGHVVAVRVSTD 413
++VF G +P+G+E +DAV S ++ V T+
Sbjct: 53 VLVFGGGPIPVGAELLDAVPSLRCIITVSAGTN 85
>01_07_0186 -
41857468-41857759,41857856-41857977,41858148-41858269,
41858439-41858547,41860076-41860174,41860251-41860384,
41860645-41860732,41860913-41860959,41861626-41861692,
41861783-41862004
Length = 433
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +2
Query: 236 RSRFDAGNDVHGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGV 415
R +DAG+ G + F + + W FI ++NKV +L N ++V GV
Sbjct: 50 RELYDAGHRCFGENYVQEFVTKAPQLPEDIRWHFIGHLQSNKVK-SLLAAVPNLHMVEGV 108
Query: 416 GTNPNGDHMAFGVNSV 463
+H+ V+S+
Sbjct: 109 DNVKIANHLDRAVSSL 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,341,247
Number of Sequences: 37544
Number of extensions: 351511
Number of successful extensions: 1155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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