Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0329
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51547| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)                 29   2.7  
SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)         29   3.6  
SB_34480| Best HMM Match : DUF988 (HMM E-Value=3.4)                    28   6.2  
SB_31867| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)              28   6.2  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    28   6.2  
SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)           28   8.2  

>SB_51547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 577 FKRPRQCSKPCCIHGCRCRTNCLVVFSGL 491
           F+RPR+  +P CIHG  C ++  V+ S L
Sbjct: 68  FRRPRKPRRPRCIHGLGCLSDRTVLASAL 96


>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
          Length = 1514

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 111  NCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGLALTLVMMFT 269
            + +E+AY L+L G++   R+C   +   I+  NAI  ++     A  +VM  T
Sbjct: 1125 SAVEHAYDLFLNGARPRCRECVD-DSPCIYTSNAIARIFLETLNAAVIVMAIT 1176


>SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)
          Length = 1008

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 266 HGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVY 367
           HG DG L F D ++ TS +++  F  +W+  + +
Sbjct: 138 HGGDGFLKFQDAEEVTSVELADAFEQMWQKQRYH 171


>SB_34480| Best HMM Match : DUF988 (HMM E-Value=3.4)
          Length = 223

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 257 YQRQSETVALVHKLNGVFGEDKSELNWETITDDVLGALEPKLIGVL 120
           Y+++    +LV  L   FG+  + L    +  D LG L+P L+G L
Sbjct: 90  YKQEKRRPSLVRALINAFGKGYAALGLFPLFADGLGILQPILLGYL 135


>SB_31867| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
          Length = 674

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 257 YQRQSETVALVHKLNGVFGEDKSELNWETITDDVLGALEPKLIGVL 120
           Y+++    +LV  L   FG+  + L    +  D LG L+P L+G L
Sbjct: 10  YKQEKRRPSLVRALINAFGKGYAALGLFPLFADGLGILQPILLGYL 55


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = +1

Query: 28   KRASIYTRRRRAKSSQM**TN*YETTR*TAWSTPINFGSRAPRTSSVIVSQLSSDLSSPK 207
            + +S+ + RRR +++Q+  T  Y+ T  T+    +   SR   T ++ VS  +  ++SP+
Sbjct: 3959 RSSSVTSIRRRFENNQLEET--YKRTETTSLVMDVQERSRESTTLAIDVSPRAPSVTSPR 4016

Query: 208  TP 213
            TP
Sbjct: 4017 TP 4018


>SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)
          Length = 1879

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +3

Query: 402  WYWESVLTRTATTWPSESTASIVSEPSGTCSPLNTTRQFVLHLQP*IQQGFEHCLGRLKP 581
            W W +V +  + TW  +  +  +S P    +PL  T Q V+ +   I++     LG +  
Sbjct: 1261 WVWPAVFSSCSPTWSYDRGSFCLSGP--PFNPLRATMQMVISVW--IRESERVLLGNIMD 1316

Query: 582  RVTAW 596
             +  W
Sbjct: 1317 WICQW 1321


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,156,454
Number of Sequences: 59808
Number of extensions: 424816
Number of successful extensions: 1364
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)