Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0329
         (691 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ...    36   0.14 
BC068223-1|AAH68223.1|  195|Homo sapiens SSH2 protein protein.         31   5.1  
BC011636-1|AAH11636.2|  178|Homo sapiens SSH2 protein protein.         31   5.1  
BC008941-1|AAH08941.1|  195|Homo sapiens SSH2 protein protein.         31   5.1  
AB072359-1|BAB84118.1|  195|Homo sapiens hSSH-2A protein.              31   5.1  

>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
            marker CA125 protein.
          Length = 22152

 Score = 35.9 bits (79), Expect = 0.14
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 402  WYWESVLTRTATTWPSESTASIVSE-PSGTCSPLNTTRQFVL 524
            W W+   +   TTWPS S +  +S   SG  +P +TT +F L
Sbjct: 2051 WLWDLTTSLPTTTWPSTSLSEALSSGHSGVSNPSSTTTEFPL 2092


>BC068223-1|AAH68223.1|  195|Homo sapiens SSH2 protein protein.
          Length = 195

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -1

Query: 496 GLQVPLGSETIDAVDSEGHVVAVRVSTDSQYQILVTLSVQDLEVD 362
           GL +PL S+T+  +D +G      VSTD++  I   +SVQ + VD
Sbjct: 139 GLVLPLWSDTLIHLDGDG---GFSVSTDNRVHIFKPVSVQAMWVD 180


>BC011636-1|AAH11636.2|  178|Homo sapiens SSH2 protein protein.
          Length = 178

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -1

Query: 496 GLQVPLGSETIDAVDSEGHVVAVRVSTDSQYQILVTLSVQDLEVD 362
           GL +PL S+T+  +D +G      VSTD++  I   +SVQ + VD
Sbjct: 122 GLVLPLWSDTLIHLDGDG---GFSVSTDNRVHIFKPVSVQAMWVD 163


>BC008941-1|AAH08941.1|  195|Homo sapiens SSH2 protein protein.
          Length = 195

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -1

Query: 496 GLQVPLGSETIDAVDSEGHVVAVRVSTDSQYQILVTLSVQDLEVD 362
           GL +PL S+T+  +D +G      VSTD++  I   +SVQ + VD
Sbjct: 139 GLVLPLWSDTLIHLDGDG---GFSVSTDNRVHIFKPVSVQAMWVD 180


>AB072359-1|BAB84118.1|  195|Homo sapiens hSSH-2A protein.
          Length = 195

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -1

Query: 496 GLQVPLGSETIDAVDSEGHVVAVRVSTDSQYQILVTLSVQDLEVD 362
           GL +PL S+T+  +D +G      VSTD++  I   +SVQ + VD
Sbjct: 139 GLVLPLWSDTLIHLDGDG---GFSVSTDNRVHIFKPVSVQAMWVD 180


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,491,778
Number of Sequences: 237096
Number of extensions: 1968093
Number of successful extensions: 5402
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5402
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)