Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0329
         (691 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    30   2.6  
BT030122-1|ABN49261.1|  540|Drosophila melanogaster IP13510p pro...    29   6.0  
AE014134-2225|AAF53207.2|  634|Drosophila melanogaster CG15485-P...    29   6.0  

>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
            protein.
          Length = 23015

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
 Frame = -1

Query: 580  GFKRPRQCSKP-------CCIHGCRCRTNCLVVFSGLQVPLGSETIDAVDS 449
            G  +PRQC KP        CIHG +C   CL    G+     SE  +A+ S
Sbjct: 2266 GCSQPRQCHKPDDCANNLACIHG-KCTDPCLHTVCGINANCQSEGHEALCS 2315


>BT030122-1|ABN49261.1|  540|Drosophila melanogaster IP13510p
           protein.
          Length = 540

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 320 KVSWKFIALWENNKVYFKILNTERNQYLVLGVGTN---PNGDHMAFGVNS 460
           K +W   A   N K  ++ L ++ N+++++GV TN    +GD++A  V +
Sbjct: 395 KTNWWSSASLRNFKERYRCLESQYNKFILMGVQTNGSLTSGDNIADNVGT 444


>AE014134-2225|AAF53207.2|  634|Drosophila melanogaster CG15485-PA
           protein.
          Length = 634

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 320 KVSWKFIALWENNKVYFKILNTERNQYLVLGVGTN---PNGDHMAFGVNS 460
           K +W   A   N K  ++ L ++ N+++++GV TN    +GD++A  V +
Sbjct: 489 KTNWWSSASLRNFKERYRCLESQYNKFILMGVQTNGSLTSGDNIADNVGT 538


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,047,802
Number of Sequences: 53049
Number of extensions: 596507
Number of successful extensions: 1932
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1931
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)