Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0329
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical p... 31 1.0
Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical p... 31 1.0
L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna polym... 30 1.4
Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf (pumilio/... 30 1.8
Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81083-2|CAB03101.3| 646|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr... 27 9.6
U41995-1|AAA83459.1| 301|Caenorhabditis elegans Serpentine rece... 27 9.6
>Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical
protein ZK1320.12b protein.
Length = 497
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 3 ARDYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 119
+ D D + EK + +KK IT++VN +IRN C+
Sbjct: 203 SEDIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical
protein ZK1320.12a protein.
Length = 495
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 3 ARDYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 119
+ D D + EK + +KK IT++VN +IRN C+
Sbjct: 203 SEDIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna
polymerase kappa) homologprotein 1 protein.
Length = 518
Score = 30.3 bits (65), Expect = 1.4
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +3
Query: 12 YDSAVEKSKHLYEEKKSEVITNVVNKLIRNN--KMNCMEYAYQLWLQGSKDIVRDCFPVE 185
Y S +K + EEK E I N + R K + ++ L+ S+D+ RDC ++
Sbjct: 31 YSSFSKKQQSRIEEKVLE-IKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVCID 89
Query: 186 FRLIFAENAIKLMYKRDGLALTLVMMFTATMADLPSATVRTKQARKSAG 332
FA A+++ RD AL V M + A L ++ ++ AG
Sbjct: 90 MDAYFA--AVEM---RDNPALRTVPMAVGSSAMLSTSNYLARRFGVRAG 133
>Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical
protein F18A11.1 protein.
Length = 485
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 66 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 242
++ V+++L N K+ C ++ QL IVR+C+ + FA I+ + K G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314
>AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 7 protein.
Length = 485
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 66 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 242
++ V+++L N K+ C ++ QL IVR+C+ + FA I+ + K G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314
>Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical
protein F43A11.3 protein.
Length = 319
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = +3
Query: 114 CMEYAYQLWL---QGSKDIVRDC----FPVEFRLIFAENAIKLMYKRDGLALTLVMMFTA 272
C+ Y Y+L + +KD+ RDC FP+ F + N + +++ + + + L+ F
Sbjct: 139 CLFYVYRLTIVIYMTAKDVARDCFYSFFPITFAWQYPPNE-ECLFEDNIILIILITFFCT 197
Query: 273 TMADL 287
T+ ++
Sbjct: 198 TILNI 202
>Z81083-2|CAB03101.3| 646|Caenorhabditis elegans Hypothetical
protein F44F1.3 protein.
Length = 646
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 227 VHKLNGVFGEDKSELNWETITDDVLGA-LEP 138
VHK+NG+F ++K + E I D LEP
Sbjct: 419 VHKINGIFSDNKKVVACEIINDSTQDIDLEP 449
>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
protein C44H9.4 protein.
Length = 1099
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 359 KVYFKILNTERNQYLVLGVGTNPNGDH 439
+ YF++L+ E N+Y+++ N +G H
Sbjct: 156 RAYFRVLSAEDNKYILIACHANLHGLH 182
>U41995-1|AAA83459.1| 301|Caenorhabditis elegans Serpentine
receptor, class x protein47 protein.
Length = 301
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 597 PMRLPEVSSVLDSVQSLAVFTVVDVEQIVLSYLAGCRYHWALKL 466
P++ ++ S ++ L + I++ Y +GCRY W+ +L
Sbjct: 108 PLKYQQLYSQRFTIGMLFTANMYAFASIIVLYTSGCRYFWSSEL 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,801,540
Number of Sequences: 27780
Number of extensions: 302862
Number of successful extensions: 1116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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