Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0329
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.68 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.6  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   8.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   8.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   8.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 538 HGCRCRTNCLVVFSGLQVPLGSETIDAVDSEGHVVAVRVSTDSQYQILVT 389
           H  R   + L  ++ L+ P+G+E+   V S G  +   +  D + Q+L+T
Sbjct: 23  HEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLLIT 72


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 246 LTLVMMFTATMADLP 290
           LTLV MFT   +D+P
Sbjct: 240 LTLVTMFTGLKSDIP 254


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 362 VYFKILNTERNQYLVLGVGTNPNGDHMAFGVN 457
           V F+I+N   N+ ++     NP+ D   F ++
Sbjct: 398 VNFRIMNANVNELILNTRCENPDNDRTPFKIS 429


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 362 VYFKILNTERNQYLVLGVGTNPNGDHMAFGVN 457
           V F+I+N   N+ ++     NP+ D   F ++
Sbjct: 398 VNFRIMNANVNELILNTRCENPDNDRTPFKIS 429


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 362 VYFKILNTERNQYLVLGVGTNPNGDHMAFGVN 457
           V F+I+N   N+ ++     NP+ D   F ++
Sbjct: 398 VNFRIMNANVNELILNTRCENPDNDRTPFKIS 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,279
Number of Sequences: 438
Number of extensions: 3694
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)