Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0329
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63450.1 68418.m07965 cytochrome P450, putative                     30   1.3  
At3g48520.1 68416.m05296 cytochrome P450 family protein similar ...    30   1.7  
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-...    29   3.8  
At5g16590.1 68418.m01942 leucine-rich repeat transmembrane prote...    28   5.1  
At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    28   5.1  
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica...    28   5.1  
At2g20595.1 68415.m02409 expressed protein                             28   5.1  
At2g27770.1 68415.m03365 expressed protein                             28   6.7  
At4g39510.1 68417.m05587 cytochrome P450 family protein contains...    27   8.9  
At4g28590.1 68417.m04089 expressed protein                             27   8.9  

>At5g63450.1 68418.m07965 cytochrome P450, putative
          Length = 510

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +2

Query: 299 GKDKTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVG 418
           G+D TS  ++W F  L +N+ V  KIL+  RN+   LG+G
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRNKG-SLGLG 344


>At3g48520.1 68416.m05296 cytochrome P450 family protein similar to
           Cytochrome P450 94A1  (P450-dependent fatty acid
           omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
           Pfam profile: PF00067 cytochrome P450
          Length = 506

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +2

Query: 299 GKDKTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVG 418
           G+D TS  ++W F  L EN+ V  KIL  E +  + LG+G
Sbjct: 304 GRDTTSAAMTWLFWLLTENDDVERKILE-EVDPLVSLGLG 342


>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
           RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1226

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = -1

Query: 448 EGHVVAVRVSTDSQYQILVTLSVQDLEVDLVVLPQSNELPADFRACFVLTVAEG-KSAIV 272
           +  + A   S   + + LV+ S +++  +L++LP  ++LPAD +A       +G +  IV
Sbjct: 747 QDEIEAACFSLKERMEQLVSSSSREI-TNLLILPIYSQLPADLQAKIFQKPEDGARKCIV 805

Query: 271 AVNI 260
           A NI
Sbjct: 806 ATNI 809


>At5g16590.1 68418.m01942 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 625

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -3

Query: 257 YQRQSETVALVHKLNGVFGEDKSELNWETITDDVLGALEPKLIGVLHAVHLVVSY 93
           Y  +    AL+H   G  G  +S LNWET  +  LGA   + I  LH+     S+
Sbjct: 417 YMSRGSLSALLH---GNKGSGRSPLNWETRANIALGA--ARAISYLHSRDATTSH 466


>At5g03800.1 68418.m00347 exostosin family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles: PF03016 exostosin family,
           PF01535 PPR repeat
          Length = 1388

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 411 PNTKYWLRSVFKILK*TLLFSHRAMNFQLTFGLV 310
           PNT+Y L+ V + +K + LF H A    +T+G++
Sbjct: 806 PNTEYVLQEVDEFMKKSFLFHHSA-KLAVTYGIL 838


>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
           to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
          Length = 802

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 380 NTERNQYLVLGVGTNPNGDHMAF 448
           N   N  L L VGTN NG H AF
Sbjct: 270 NHHYNSSLELAVGTNNNGGHFAF 292


>At2g20595.1 68415.m02409 expressed protein
          Length = 69

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 565 RQCSKPCCIHGCRCRTNCLVVFSGLQVPL 479
           RQCS+PC      C  NC +   G + PL
Sbjct: 33  RQCSQPCRSDDGSCYENCKIECGGPKPPL 61


>At2g27770.1 68415.m03365 expressed protein
          Length = 320

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
 Frame = +2

Query: 353 NNKVYFKILNTERNQYLVLGVGTNPNGDHMAFGVNSVDS----FRAQWYLQPAKYDKTIC 520
           NN +   + + ++N    L + T+        G  SVDS        W L  AKYD  +C
Sbjct: 74  NNGLSISVASADQNPSTTLKLNTSSRFFRKKKGNKSVDSDLGKIEVFWDLSSAKYDSNLC 133


>At4g39510.1 68417.m05587 cytochrome P450 family protein contains
           Pfam PF00067: Cytochrome P450; similar to  Cytochrome
           P450 86A2 (SP:O23066) [Arabidopsis thaliana]
          Length = 508

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 275 DGRLAFG-DGKDKTSPKVSWKFIALWENNKVYFKI 376
           D  LAF   G+D TS  +SW F  L EN +V  KI
Sbjct: 303 DTILAFNLAGRDTTSSALSWFFWLLSENPQVVTKI 337


>At4g28590.1 68417.m04089 expressed protein 
          Length = 331

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 224 HKLNGVFGEDKSELNWETITDD 159
           H +  V G+D SE++WE   DD
Sbjct: 180 HPIKNVVGDDGSEIDWEGEIDD 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,025,788
Number of Sequences: 28952
Number of extensions: 284805
Number of successful extensions: 993
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)