Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0328
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79600-7|CAI79194.1|  173|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z50857-6|CAA90720.1|  283|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z50806-6|CAA90692.1|  283|Caenorhabditis elegans Hypothetical pr...    29   3.2  

>Z79600-7|CAI79194.1|  173|Caenorhabditis elegans Hypothetical
           protein F59C6.12 protein.
          Length = 173

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -2

Query: 106 KYNGNI*CQLFLYILNHNEYLFLNDNR 26
           +YNG I  + + Y ++HN +LFL+D+R
Sbjct: 14  QYNGKI--REYFYYVSHNGFLFLDDSR 38


>Z50857-6|CAA90720.1|  283|Caenorhabditis elegans Hypothetical
           protein M79.2 protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 491 CLKGICFYLFFLF*STAIMFRFYSLGSCISLLF 589
           C   +  ++FFLF    ++  FY  GSCI+L +
Sbjct: 27  CFFPLASFVFFLFIKYMLLSIFYFYGSCITLTY 59


>Z50806-6|CAA90692.1|  283|Caenorhabditis elegans Hypothetical
           protein M79.2 protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 491 CLKGICFYLFFLF*STAIMFRFYSLGSCISLLF 589
           C   +  ++FFLF    ++  FY  GSCI+L +
Sbjct: 27  CFFPLASFVFFLFIKYMLLSIFYFYGSCITLTY 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,475
Number of Sequences: 27780
Number of extensions: 210477
Number of successful extensions: 459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)