Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0327
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    27   3.0  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    27   3.0  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   4.0  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    26   4.0  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    25   7.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    22   7.8  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   9.3  

>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 119 VQTTVKKIHAYSHHLFALXTL 181
           ++  VKKIH ++H +F L TL
Sbjct: 63  LKVAVKKIHPFNHPVFCLRTL 83


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = +2

Query: 98  RTVLWYVVQTTV-----KKIHAYSHHLFAL 172
           R + WY + TT+     + I+AY HHLF +
Sbjct: 109 RFINWYFLMTTLYYAYGESIYAYFHHLFIM 138


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 62  IFIMLVACVASQRTVLWYVVQTTVKK--IHAYSHHLFAL 172
           +F M  ACV    T LW   + T++K  IHA S   F +
Sbjct: 158 LFYMCRACVIYPITPLWDAKERTMRKATIHALSRIFFLI 196


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 4   HETQDYYEKRIQKFQNENVDFYNA 75
           H+  DY+ ++ +K QN+N   Y +
Sbjct: 31  HDYADYFSRKQRKLQNQNAALYKS 54


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 316 ICIKRVCTKLV*SFSLAGKYKLAILLSRPVRNIICVRNKIDNNMHCSKYRNL 471
           I IK++  K    FSL       +LL  P+ NIIC +        C K+ ++
Sbjct: 19  ITIKKIRKKGNGIFSLNRYTSGTVLLEVPLENIICRKTVEQFRNSCDKFASI 70


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 21.8 bits (44), Expect(2) = 7.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 150 YAWIFFTVVCTTYQSTV 100
           Y   FF++ C  YQS +
Sbjct: 540 YVHFFFSIGCVAYQSFI 556



 Score = 21.4 bits (43), Expect(2) = 7.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 87  THATSIIKINVFILKFLNTFLVIVLSL 7
           T  ++ + I VFI KF+ ++  + LS+
Sbjct: 593 TLLSAALWITVFIAKFVESYYFLTLSV 619


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 416 IIFRTGRDRSIASLYFPANENDYTSLVQTLLMHMR 312
           +I + G + S+ +LY P  +ND  S+V    M  R
Sbjct: 230 LICKGGTNISLKTLYMPLLKNDLGSIVDIATMSTR 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,922
Number of Sequences: 5004
Number of extensions: 49899
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)