Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0327
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0002 - 15280292-15281550,15282714-15282840                       31   1.0  
04_01_0271 + 3612066-3614056,3614666-3614780                           30   1.4  

>06_03_0002 - 15280292-15281550,15282714-15282840
          Length = 461

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +1

Query: 217 CPACVTLLGEGXNCKIYSKELGETPSAVCKEPLICIKRVCTKLV*SFSLAGKYKLAILLS 396
           C  C++L+     C  Y   L   P       + C  R C + V  + +AG+++ A++  
Sbjct: 164 CTECLSLVRSAAVCS-YCLSLDNLPPE--DSSVTC--RCCNRCVHPYCIAGEHRAALIQP 218

Query: 397 RPVRNIICV 423
             V N ICV
Sbjct: 219 IDVENFICV 227


>04_01_0271 + 3612066-3614056,3614666-3614780
          Length = 701

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 78  WHALRHSVRCFGMWYRL 128
           W +LRH+V C G W+RL
Sbjct: 341 WSSLRHAVLCAGRWHRL 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,855,536
Number of Sequences: 37544
Number of extensions: 294769
Number of successful extensions: 610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)