Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0327
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 37 0.016
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0) 33 0.26
SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19) 32 0.46
SB_33509| Best HMM Match : Kazal_1 (HMM E-Value=2.3e-26) 30 1.8
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_33512| Best HMM Match : Kazal_1 (HMM E-Value=2.6e-20) 29 2.4
SB_45116| Best HMM Match : EGF (HMM E-Value=0) 29 3.2
SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0) 29 3.2
SB_1875| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12) 29 4.2
SB_36366| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_44384| Best HMM Match : Kazal_1 (HMM E-Value=1.4e-21) 27 9.8
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 36.7 bits (81), Expect = 0.016
Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +1
Query: 106 ALVCGTD-YCEKNPCIQPPLVCPXNTXXRXRHAGXCACCPACVTLLGEGXNCKIYSKELG 282
A VCGTD + CI C R +HAG C C V G NC + G
Sbjct: 372 APVCGTDDRTYPSECIMKTSACADKKAVRVKHAGECGPCGTLVCT--NGKNC--VTSHQG 427
Query: 283 ETPSAVCKEP 312
T AVC P
Sbjct: 428 LTRQAVCACP 437
Score = 33.9 bits (74), Expect = 0.11
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Frame = +1
Query: 112 VCGTDYCE-KNPCIQPPLVCPXNTXXRXRHAGXCACC---------PACVTLLGEGXNCK 261
VCG+D +N C L CP N +H G CA C CVT L + C
Sbjct: 1157 VCGSDKVSYRNKCYMIALNCPKNKYVYVKHEGYCAPCRLAECHKVYAKCVTTLYQTARCV 1216
Query: 262 IYS-KELGETPSAVCKEPLICIKRVC 336
+ +E AVC + + C
Sbjct: 1217 CPTLQECAARKGAVCASDMKTYQSEC 1242
>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 293
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Frame = +1
Query: 112 VCGTD-YCEKNPCIQPPLVCPXNTXXRXRHAGXCA-----CCPAC 228
VCG+D NPC+ VC N R +H G C C P C
Sbjct: 129 VCGSDGKTYDNPCVFKIAVCQMNGQLRLKHRGACGSRPDKCAPIC 173
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +1
Query: 112 VCGTDYCE-KNPCIQPPLVCPXNTXXRXRHAGXCACCPAC 228
VCG+D NPC+ C N +H G C +C
Sbjct: 180 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKCGSSQSC 219
>SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 92 SQRTVLWYVVQTTVKKIHAYSHHLFALXTLXXAPD 196
S+R VLW V + ++ + A+S+ LF+L + PD
Sbjct: 172 SERRVLWDVASSKIRAVTAFSNSLFSLNSNAFCPD 206
>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
Length = 173
Score = 31.9 bits (69), Expect = 0.46
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Frame = +1
Query: 112 VCGTDYCE-KNPCIQPPLVCPXNTXXRXRHAGXCACCPACVTLLGEGXN-CKIYSKELGE 285
VCG+D NPC+ C N +H G C +C +G CK+ +G
Sbjct: 37 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKCGSSQSCEQKKCKGTKVCKM----IGN 92
Query: 286 TPSAVCKEPLICIKRVC 336
P + C K C
Sbjct: 93 KPRCMRPPQTACSKVRC 109
>SB_33509| Best HMM Match : Kazal_1 (HMM E-Value=2.3e-26)
Length = 143
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Frame = +1
Query: 112 VCGTDY-CEKNPCIQPPLVCPXNTXXRXRHAGXCACCPACVTLLGEGXNCKIYSKELGET 288
VCGTD N C+ C N R G C C CK +
Sbjct: 38 VCGTDNNTYDNECLMRQQACVANATVAVRRKGHCDPCSKVTCDSPPYSTCKAQD----DK 93
Query: 289 PSAVCKEP 312
P+ VC EP
Sbjct: 94 PTCVCVEP 101
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Frame = +1
Query: 112 VCGTDY-CEKNPCIQPPLVCPXNTXXRXRHAGXCACCPACVTLLGEGXNCKIYSKELGET 288
VCG+D N C+ C NT R G C C CK +
Sbjct: 1217 VCGSDNNTYDNECLMRQQACVANTTVAVRRKGDCDPCSNVTCDSPPYSTCKAQD----DQ 1272
Query: 289 PSAVCKEP 312
P+ VC EP
Sbjct: 1273 PTCVCVEP 1280
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +1
Query: 109 LVCGTDYCE-KNPCIQPPLVCPXNTXXRXRHAGXCACC 219
LVCGTD N C+ C N+ + + G C C
Sbjct: 1519 LVCGTDNITYSNECLMKYQACRTNSALKVKRKGDCDVC 1556
>SB_33512| Best HMM Match : Kazal_1 (HMM E-Value=2.6e-20)
Length = 87
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +1
Query: 112 VCGTDY-CEKNPCIQPPLVCPXNTXXRXRHAGXCACCP 222
VCG+D N C+ C NT R G C CP
Sbjct: 10 VCGSDNNTYDNECLMRQQACVANTTVAVRRKGDCEPCP 47
>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
Length = 2023
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +1
Query: 61 DFYNAGGMRCVTAYGALVCGTDY--CEKNPCI 150
D N+ CV+ Y L C TD C NPC+
Sbjct: 1163 DQVNSFSCTCVSGYTGLKCETDINECASNPCV 1194
>SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 320
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +1
Query: 112 VCGTDY-CEKNPCIQPPLVCPXNTXXRXRHAGXCACCP 222
VCGTD N C+ C N R G C CP
Sbjct: 172 VCGTDNNTYDNECLMRQQACVANATVAVRRKGHCEPCP 209
>SB_1875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 425 RTQIIFRTGRDRSIASLYFPANENDYTSLVQTLLMHMRG-SLHTAEGVSPSSFE*ILQLX 249
RT IFR RD+ + +L+F NE T L+M L +G+S S +L
Sbjct: 143 RTTAIFRHARDKHV-TLFFFINEKLNTQHKTILIMKSPDPRLKYIDGMSQSEMRLVLVKY 201
Query: 248 PSPS 237
P PS
Sbjct: 202 PLPS 205
>SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12)
Length = 515
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = +1
Query: 49 NENVDFYNAGGMRCVTAYGALVCGTDYCEKNPCIQPPLVCPXNTXXRXRHAG 204
++NV+ N GG YG C YC N P C N R + G
Sbjct: 88 SQNVNVRNCGGFYIYEIYGTPTCNLRYC-GNGGAGPSSCCNWNENIRILNCG 138
>SB_36366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 448 HCSKYRNLKLKNMN 489
HCSKYRN+K K +N
Sbjct: 264 HCSKYRNIKQKYIN 277
>SB_44384| Best HMM Match : Kazal_1 (HMM E-Value=1.4e-21)
Length = 85
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +1
Query: 112 VCGTDYCE-KNPCIQPPLVCPXNTXXRXRHAGXC 210
VCG+D NPC+ C N +H G C
Sbjct: 51 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKC 84
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,105,442
Number of Sequences: 59808
Number of extensions: 368243
Number of successful extensions: 978
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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