Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0327
         (643 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    25   2.7  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   2.7  

>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
            precursor protein.
          Length = 1623

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 20/59 (33%), Positives = 24/59 (40%)
 Frame = +1

Query: 79   GMRCVTAYGALVCGTDYCEKNPCIQPPLVCPXNTXXRXRHAGXCACCPACVTLLGEGXN 255
            G +C   YG   C  D  E   C +    C  N   R  H G C  CPAC  L+ +  N
Sbjct: 996  GSQC-NQYGQCPCN-DNVEGRRCDR----CKENKYDR--HQG-CLDCPACYNLVQDAAN 1045


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 425 RTQIIFRTGRDRSIASLYFPANENDYTSLVQTLLMHMRGS 306
           R +   + G+    A L   A EN+     Q +L H+RGS
Sbjct: 353 RLEKAIKVGKRAEFAKLIDIAEENELGVGYQVVLSHLRGS 392


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,595
Number of Sequences: 2352
Number of extensions: 13506
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63141405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)