Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0327
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF039036-5|AAB94164.2|  351|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z68296-6|CAE17754.1|  195|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    28   6.5  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       27   8.6  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       27   8.6  

>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = +1

Query: 118 GTDYCEKNPCIQPPLVCPXNTXXRXRHAGXCA-CCPACVTLLGEGXNCKIYSKELGETPS 294
           G D C    C   P  CP N     R +G C  CCP   T +  G  C + S   G    
Sbjct: 530 GVD-CNNGACCPLP-TCPNNIASSQRCSGGCTNCCPVGQTCMNGGC-CDLPSCPSGGFAI 586

Query: 295 AVC 303
           ++C
Sbjct: 587 SMC 589


>Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical
           protein K05D4.3 protein.
          Length = 321

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = -3

Query: 416 IIFRTGRDRSIASLYFPANENDYTSLVQTLLMH 318
           ++FR+ R R  ++  FP  ++ Y+++V+T ++H
Sbjct: 47  VVFRSNRQRDRSTPIFPIIKHFYSTVVRTYILH 79


>AF039036-5|AAB94164.2|  351|Caenorhabditis elegans Hypothetical
           protein E03D2.4 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 568 HTLSRYPDRVTCIIHTISFRFVRFIKNSYFLVS 470
           H+ + YPDR  C  + +  R  R I  +YFL+S
Sbjct: 14  HSFTLYPDRYKCPENMMIVRTERPILGAYFLIS 46


>Z68296-6|CAE17754.1|  195|Caenorhabditis elegans Hypothetical
           protein C46C2.6a protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 166 CPXNTXXRXRHAGXCACCPACVTLLGEGXNC-KIYSKELGETPSAVCK-EPLIC 321
           CP +     +H+G CA   AC+     G  C K++S ++  T    CK +P+ C
Sbjct: 60  CPSDYDFIRQHSGRCADGTACIPDSSFGEPCIKLFSYQM--TKKFCCKSDPIDC 111


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 40  KFQNENVDFYNAGGMRCVTAYGALVCGTDYCEKNPCI 150
           K+ +++VD        C   +G   C    CE NPC+
Sbjct: 609 KYNDDDVDEKPTFECFCAAGFGGPKCDQRPCESNPCL 645


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 40  KFQNENVDFYNAGGMRCVTAYGALVCGTDYCEKNPCI 150
           K+ +++VD        C   +G   C    CE NPC+
Sbjct: 609 KYNDDDVDEKPTFECFCAAGFGRPKCDQRPCESNPCL 645


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 40  KFQNENVDFYNAGGMRCVTAYGALVCGTDYCEKNPCI 150
           K+ +++VD        C   +G   C    CE NPC+
Sbjct: 609 KYNDDDVDEKPTFECFCAAGFGRPKCDQRPCESNPCL 645


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,396,684
Number of Sequences: 27780
Number of extensions: 290961
Number of successful extensions: 714
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)