Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0327
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44370.1 68416.m04767 expressed protein weak similarity to At...    29   2.0  
At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containi...    27   8.0  
At1g75470.1 68414.m08766 purine permease-related contains Pfam p...    27   8.0  

>At3g44370.1 68416.m04767 expressed protein weak similarity to
           AtOXA1 [Arabidopsis thaliana] GI:6624207
          Length = 338

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 631 SQNLHNY*RLMENIIIXLDELHTLSRYPDRVTCIIHTISFR 509
           SQ+L NY  L + +I  LD  H ++  P  V     T++FR
Sbjct: 110 SQDLSNYDYLTQPVISLLDSYHDITGLPWWVVIATSTVAFR 150


>At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1141

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 304 YTQRRGFRLVPSNKSCN*XLHQ-VKLHKRDN 215
           +++ + FR+ P  +SCN  LH+  KL K D+
Sbjct: 83  FSKMKRFRVFPKTRSCNGLLHRFAKLGKTDD 113


>At1g75470.1 68414.m08766 purine permease-related contains Pfam
           profile PF03151: Domain of unknown function, DUF250; low
           similarity to purine permease [Arabidopsis thaliana]
           GI:7620007
          Length = 381

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 551 ISGQCM*LVEXNYYILHKSL 610
           ++GQC+  +  NYY LHK+L
Sbjct: 49  VTGQCIARLLENYYFLHKNL 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,095,316
Number of Sequences: 28952
Number of extensions: 249540
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)