Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0326
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    27   2.6  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    26   5.9  

>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 458 FSVPTAGSKTPK*TSPPRHSAY-RYSSGLTYPYQMSLRTY 574
           F +PT G +T    S PR + Y  YS G  YP+   +  Y
Sbjct: 671 FPMPTYGGRTQD-QSYPRQNGYPSYSDGNVYPHDRVMINY 709


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +3

Query: 441 REQHQCLAFLQQAQKHLSKLLHLDIQ-RTVIRQG*RTRTRCPYVHIECFKKRVLPIHPHV 617
           + Q   L FL+Q ++HLS+L  +D   RT++  G       P V    F  +V      V
Sbjct: 142 KRQKSSLEFLEQVRQHLSRLPAIDPNTRTLLVCG------YPNVGKSSFMNKVTRAQVDV 195

Query: 618 GPYFCLESYLCITRFE 665
            PY      L +  F+
Sbjct: 196 QPYAFTTKSLFVGHFD 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,913,341
Number of Sequences: 5004
Number of extensions: 59700
Number of successful extensions: 156
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)