Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0325
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...   101   1e-22
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   3.1  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    26   4.1  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    26   5.4  
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    25   9.5  

>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score =  101 bits (241), Expect = 1e-22
 Identities = 44/84 (52%), Positives = 62/84 (73%)
 Frame = +1

Query: 4   PHQREVTRILQFAAQASHELVPYEVIEPVMRAIANNFITERNSTDVMAVGLNAVREICTR 183
           PHQR+VT+ L   AQASHE VP + +EP++R IA+ F+T   + +V+  G+NA+RE+C R
Sbjct: 369 PHQRDVTQFLACLAQASHEFVPPDALEPLVRKIADEFVTSGVANEVVCAGINAIREVCAR 428

Query: 184 CPLAIGEDLLRDLVQYKSYKEKSV 255
            PLA+  DLL+DL +YKS K+K V
Sbjct: 429 APLAMTPDLLQDLTEYKSSKDKGV 452



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 30/58 (51%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
 Frame = +3

Query: 255 MMAARSLIQLYRQSMPELLHKKDRGRPTEASIELKTK---KYG-ELETKDYIPGSEVL 416
           MMA+RSLI LYR+  P++L +KDRG+   ASIE+K +   KYG EL     I G E+L
Sbjct: 453 MMASRSLITLYREVAPDMLKRKDRGK--LASIEMKDRTPLKYGEELNVTHGIQGLELL 508


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 79  IEPVMRAIANNFITERNSTDVMAVGLNAV-REICTRCPLAIGE 204
           + P++  ++NN   E NSTD+  V + ++ +E      L+ GE
Sbjct: 713 LAPILSRVSNNVTIENNSTDIPHVVIASISKEGVPSVTLSTGE 755


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 623 VCQTCYQYRLHH 588
           +C +C+Q+RLHH
Sbjct: 193 ICVSCHQFRLHH 204


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 111 VICNGTHYWLNNFIWYQLMGSLCSKLQNSSN 19
           ++  GTHY+L + ++     S   KL N S+
Sbjct: 96  IVVGGTHYYLQSLLFEDTTLSAIDKLTNDSS 126


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 569 NGEAEQCDVDDTDNMFDRPEDTVQKNE 649
           N EAE  DV+  D +    +D VQK E
Sbjct: 138 NAEAEPSDVNAVDYIIQSAKDKVQKLE 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,416
Number of Sequences: 5004
Number of extensions: 30676
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)