Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0325
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785...    52   4e-07
11_01_0437 - 3347960-3349246                                           32   0.34 
05_01_0500 - 4171090-4171191,4171989-4172061,4172376-4172701,417...    29   3.2  
06_03_0213 - 18063536-18063707,18063786-18064186,18064317-18064706     27   9.8  
06_01_1129 + 9326975-9327071,9327174-9327306,9327408-9327479,932...    27   9.8  

>04_04_1250 +
           32077590-32078000,32078132-32078308,32078437-32078561,
           32078629-32078761,32078866-32079015,32079105-32079158,
           32079437-32079532,32080021-32080095,32080723-32080824,
           32080903-32081589,32081686-32081817,32081916-32082023,
           32082170-32082319
          Length = 799

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 28/61 (45%), Positives = 37/61 (60%)
 Frame = +3

Query: 234 KLQRKICMMAARSLIQLYRQSMPELLHKKDRGRPTEASIELKTKKYGELETKDYIPGSEV 413
           K   K   +AARSLI L+R+  P LL KKDRGRP  A  + + K +GE      +PG+E+
Sbjct: 422 KSHEKAVSIAARSLITLFREICPSLLVKKDRGRP--ADPKARPKAFGEATIASDVPGAEL 479

Query: 414 L 416
           L
Sbjct: 480 L 480



 Score = 31.9 bits (69), Expect = 0.46
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = +1

Query: 64  VPYEVIEPVMRAIANNFITERNSTDVMAVGLNAVREICTRCPLAIGEDLLRDLVQYKSYK 243
           VP + +EP+ + I N F+ +R+  ++M                   EDLL+DLV YK   
Sbjct: 383 VPPDAVEPLFKQIVNQFVHDRSRPELM------------------NEDLLQDLVLYKKSH 424

Query: 244 EKSV 255
           EK+V
Sbjct: 425 EKAV 428


>11_01_0437 - 3347960-3349246
          Length = 428

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +1

Query: 64  VPYEVIEPVMRAIANNFITERNSTDVMAVGLNAVREICTR-CPLAIGEDLL--RDLVQYK 234
           +P+E+++PVMR + +  +   N T+V      AVR +  R C   + + +L  R L++  
Sbjct: 316 LPWELLQPVMRVLGHCLLAPLNPTEVRDTAAEAVRVVYARACHELVPQAILASRSLIELD 375

Query: 235 SYKEKS 252
               K+
Sbjct: 376 KSARKA 381


>05_01_0500 -
           4171090-4171191,4171989-4172061,4172376-4172701,
           4173164-4173555,4174521-4174853,4177118-4177209,
           4178052-4178111,4178760-4178903,4180142-4180213,
           4180345-4180510,4180776-4180923
          Length = 635

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 240 QRKICMMAARSLIQLYRQSMPELLHK 317
           +RKI + AAR L+ L+ Q  P+++H+
Sbjct: 352 RRKIALGAARGLVYLHEQCDPKIIHR 377


>06_03_0213 - 18063536-18063707,18063786-18064186,18064317-18064706
          Length = 320

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = -2

Query: 176 HISRTAFNPTAITSVEFRSVIKLFAMARITGSITSYGTNSWEACAAN 36
           H  +    PT    V F+ +  L+ +  +   +  Y   SW+ C  N
Sbjct: 227 HDGKPFLGPTNYIVVHFKDLFDLYRLRAVESLLKCYSLLSWQWCQKN 273


>06_01_1129 +
           9326975-9327071,9327174-9327306,9327408-9327479,
           9327593-9327736,9327950-9328021,9328219-9328278,
           9328384-9328637,9329940-9330281,9332001-9332380,
           9333867-9334235
          Length = 640

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 240 QRKICMMAARSLIQLYRQSMPELLHK 317
           +R+I + AAR L+ L+ Q  P+++H+
Sbjct: 401 RRRIAVGAARGLVYLHEQCDPKIIHR 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,870,083
Number of Sequences: 37544
Number of extensions: 176545
Number of successful extensions: 402
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)