Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0325
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33427| Best HMM Match : No HMM Matches (HMM E-Value=.)              92   4e-19

>SB_33427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 40/62 (64%), Positives = 52/62 (83%)
 Frame = +1

Query: 70  YEVIEPVMRAIANNFITERNSTDVMAVGLNAVREICTRCPLAIGEDLLRDLVQYKSYKEK 249
           ++V+EP +R I NNF+TERNS +VMAVGLNAVRE+C RCPL + + LL+DL QYK+ K+K
Sbjct: 498 HQVVEPGVRTIVNNFVTERNSHEVMAVGLNAVREVCQRCPLVMTDTLLQDLAQYKTSKDK 557

Query: 250 SV 255
           SV
Sbjct: 558 SV 559



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 34/57 (59%), Positives = 42/57 (73%)
 Frame = +3

Query: 246 KICMMAARSLIQLYRQSMPELLHKKDRGRPTEASIELKTKKYGELETKDYIPGSEVL 416
           K  MMA++SLIQL+R   P LLHKKDRG+PTE+  + K   Y  +E KDYIPG+EVL
Sbjct: 557 KSVMMASQSLIQLFRSVNPNLLHKKDRGQPTESREDSKPLDYAAVEAKDYIPGAEVL 613


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,457,926
Number of Sequences: 59808
Number of extensions: 226880
Number of successful extensions: 602
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)