Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0325
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.     113   1e-25
AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical...   113   1e-25

>EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.
          Length = 801

 Score =  113 bits (271), Expect = 1e-25
 Identities = 49/84 (58%), Positives = 67/84 (79%)
 Frame = +1

Query: 4   PHQREVTRILQFAAQASHELVPYEVIEPVMRAIANNFITERNSTDVMAVGLNAVREICTR 183
           P QR+VT+IL +AAQA HE+VP + +E ++R IANNF+T+RNS + M VG+NA+REI + 
Sbjct: 391 PKQRDVTKILLYAAQACHEMVPPDTVEQLIRVIANNFVTDRNSPEAMTVGINAIREILSN 450

Query: 184 CPLAIGEDLLRDLVQYKSYKEKSV 255
           CP A  E+LLRDL +YK+YK K+V
Sbjct: 451 CPFAATEELLRDLSEYKTYKNKNV 474



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +3

Query: 240 QRKICMMAARSLIQLYRQSMPELLHKKDRGRPTEASIE-LKTKKYGELETKDYIPGSEVL 416
           + K   MAARSLI L+R   P+LL +KDRG+P E   E  +   +   +  D+I G+E+L
Sbjct: 470 KNKNVSMAARSLITLFRAVNPKLLARKDRGKPQEKDDEDEEYNGFARPKVHDFISGAEIL 529


>AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical
           protein Y39B6A.14 protein.
          Length = 801

 Score =  113 bits (271), Expect = 1e-25
 Identities = 49/84 (58%), Positives = 67/84 (79%)
 Frame = +1

Query: 4   PHQREVTRILQFAAQASHELVPYEVIEPVMRAIANNFITERNSTDVMAVGLNAVREICTR 183
           P QR+VT+IL +AAQA HE+VP + +E ++R IANNF+T+RNS + M VG+NA+REI + 
Sbjct: 391 PKQRDVTKILLYAAQACHEMVPPDTVEQLIRVIANNFVTDRNSPEAMTVGINAIREILSN 450

Query: 184 CPLAIGEDLLRDLVQYKSYKEKSV 255
           CP A  E+LLRDL +YK+YK K+V
Sbjct: 451 CPFAATEELLRDLSEYKTYKNKNV 474



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +3

Query: 240 QRKICMMAARSLIQLYRQSMPELLHKKDRGRPTEASIE-LKTKKYGELETKDYIPGSEVL 416
           + K   MAARSLI L+R   P+LL +KDRG+P E   E  +   +   +  D+I G+E+L
Sbjct: 470 KNKNVSMAARSLITLFRAVNPKLLARKDRGKPQEKDDEDEEYNGFARPKVHDFISGAEIL 529


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,968,705
Number of Sequences: 27780
Number of extensions: 174713
Number of successful extensions: 423
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)