Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0325
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF052...    83   2e-16
At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profi...    75   5e-14
At5g64090.1 68418.m08049 expressed protein                             31   0.88 

>At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF05285:
           SDA1 domain; similar to mystery 45A
           (GI:16797816){Drosophila melanogaster}
          Length = 804

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 36/85 (42%), Positives = 58/85 (68%)
 Frame = +1

Query: 1   LPHQREVTRILQFAAQASHELVPYEVIEPVMRAIANNFITERNSTDVMAVGLNAVREICT 180
           LPH +++T+IL  A Q+ H+ VP +V+EP+ + I N F+ +++  + +AVGLN VRE+C 
Sbjct: 384 LPHVKDITQILAAAVQSCHDGVPSDVVEPLFKQIVNQFVHDKSRPEAIAVGLNVVREMCL 443

Query: 181 RCPLAIGEDLLRDLVQYKSYKEKSV 255
           R    + E+LL+DL  YK   EK++
Sbjct: 444 RVHDLMTEELLQDLALYKKSHEKAI 468



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 28/61 (45%), Positives = 35/61 (57%)
 Frame = +3

Query: 234 KLQRKICMMAARSLIQLYRQSMPELLHKKDRGRPTEASIELKTKKYGELETKDYIPGSEV 413
           K   K    AARSLI L+R+  P LL KKDRGRP  A++ +  K YGE      +P  E+
Sbjct: 462 KSHEKAISAAARSLIALFREINPSLLVKKDRGRP-GATVFI-PKHYGESNVFSNVPNVEL 519

Query: 414 L 416
           L
Sbjct: 520 L 520


>At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profile
           PF05285: SDA1
          Length = 698

 Score = 74.5 bits (175), Expect = 5e-14
 Identities = 34/78 (43%), Positives = 52/78 (66%)
 Frame = +1

Query: 13  REVTRILQFAAQASHELVPYEVIEPVMRAIANNFITERNSTDVMAVGLNAVREICTRCPL 192
           +++T+IL  A QA H+ VP + +EP+ + I N F+ +R+S + + V LN VRE+  R P 
Sbjct: 304 KDITQILAAAVQACHDGVPSDAVEPLFKQIVNKFLHDRSSPEAIPVALNVVREMFLRIPE 363

Query: 193 AIGEDLLRDLVQYKSYKE 246
            + EDLL DL QYK+ K+
Sbjct: 364 LMTEDLLHDLAQYKTDKK 381



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 25/61 (40%), Positives = 34/61 (55%)
 Frame = +3

Query: 234 KLQRKICMMAARSLIQLYRQSMPELLHKKDRGRPTEASIELKTKKYGELETKDYIPGSEV 413
           +  RK    A+ SLI L+R+  P LL KKDRGRP       + KKYGE+     +P  ++
Sbjct: 383 RTHRKAISAASASLIALFREINPLLLVKKDRGRP--GGPIARPKKYGEVNVFSNVPNVDL 440

Query: 414 L 416
           L
Sbjct: 441 L 441


>At5g64090.1 68418.m08049 expressed protein 
          Length = 448

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 64  VPYEVIEPVMRAIANNFITERNSTDVMAVGLNAVREICTR 183
           +P+E+ +P +R + +  ++  N+ DV     NAVR +  R
Sbjct: 352 LPWELFQPTLRILGHCLLSPLNTEDVKDAASNAVRSLYAR 391


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,965,678
Number of Sequences: 28952
Number of extensions: 151892
Number of successful extensions: 371
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)