Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0324
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   5.0  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   6.6  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    21   8.7  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   8.7  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   8.7  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    21   8.7  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.7  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +1

Query: 208 APQADSRRSMMTKKQSAGRYIANPVHAQHSI 300
           A Q  +  +  T  Q+   +  + +HAQH +
Sbjct: 306 AAQQQNNNNAATNNQNHHHHAGHHIHAQHHV 336


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 377 PPVTPMEVKXLIKDLRPRK 433
           PP TP++ K +   L+P++
Sbjct: 60  PPRTPLQPKLVAGKLKPKR 78


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 257 LADTLQTQCTPSTQ 298
           LAD LQT C+  +Q
Sbjct: 65  LADALQTSCSKCSQ 78


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 251 RVLADTLQTQCTPSTQ 298
           RVL + LQT C   T+
Sbjct: 62  RVLPEALQTNCAKCTE 77


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 376 TTRHPDGS*XXDQRPTSS 429
           +T H DG+   D RP SS
Sbjct: 60  STSHTDGASTPDVRPPSS 77


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 257 LADTLQTQCTPSTQ 298
           LAD LQT C+  +Q
Sbjct: 65  LADALQTSCSKCSQ 78


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 376 TTRHPDGS*XXDQRPTSS 429
           +T H DG+   D RP SS
Sbjct: 216 STSHTDGASTPDVRPPSS 233


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,070
Number of Sequences: 336
Number of extensions: 3307
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)