Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0324
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.8  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    26   4.1  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   4.1  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    26   5.4  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   9.4  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   9.4  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 161 SYSQIGYGSNYAPPRRPLRPTRG 229
           SYSQ  Y     PP+ P  P+RG
Sbjct: 96  SYSQPSYSQPSQPPKEPALPSRG 118


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
 Frame = +2

Query: 362 PSDALPPVTPMEVKXLIKDLRPRKAPGSDGISN---RVIKLLPVQLIVMLASFSMPLWRT 532
           P+  +PP+ P +   L     PRKA       N   R+++L   Q ++     S P++  
Sbjct: 71  PAAIVPPI-PGKQSLLSYAKHPRKAKSDAEFLNFRSRMLELFLRQCLLHPCIRSNPIFDK 129

Query: 533 VSFPRCGKKRTLSGIHKPGKPKNHPIELPP 622
                     TLS +  P      P+ LPP
Sbjct: 130 FIHSTVSWHVTLSSLDLPKDSNTDPLRLPP 159


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 164 YSQIGYGSNYAPPRRPLRPTRG 229
           YS+ GY     PPR  L P++G
Sbjct: 898 YSRGGYSRGSVPPRETLAPSKG 919


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 344 VLPHCLLILHEQGPRIECW 288
           ++P C + L+E+GPR+  W
Sbjct: 22  LIPKCTIDLYEKGPRLGGW 40


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 223 SRRSMMTKKQSAGRYIANPVHAQHSIRGP 309
           +RR++  KK+S+ + + NPV   H ++ P
Sbjct: 339 ARRALFEKKESSTKNVENPV--SHHLKSP 365


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 411  SKTYVLARLPVPTVYPTALL-NFYPSNSS*CWHLFQCRYGELYLS 542
            SK  V+  LP+ T+Y T  +  FY S S     ++    G+ Y+S
Sbjct: 1290 SKVKVVFGLPIDTIYQTTEVGKFYASTSVAVKQMYAESEGDSYVS 1334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,493
Number of Sequences: 5004
Number of extensions: 56185
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)