Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0324
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 32 0.45
07_03_0766 - 21354494-21354772,21355094-21355247,21355340-213555... 30 1.8
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 30 1.8
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 30 1.8
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458... 29 4.2
09_02_0374 - 8112021-8112820,8112908-8113152,8113256-8113455,811... 28 5.6
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509... 28 5.6
02_04_0213 + 20974712-20975413 28 5.6
11_01_0448 - 3469398-3469676,3470015-3470284,3470386-3470476,347... 28 7.4
05_03_0184 + 9339939-9340896,9341003-9341083,9341166-9341383,934... 28 7.4
05_01_0512 - 4259162-4259849,4260209-4260432,4260854-4261071,426... 28 7.4
03_05_1007 - 29637911-29638333,29640095-29640282,29640688-296407... 28 7.4
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 27 9.7
03_06_0618 - 35132077-35132830,35133690-35135212 27 9.7
01_06_1154 - 34955235-34955827,34955912-34956045,34956142-349563... 27 9.7
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 31.9 bits (69), Expect = 0.45
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -3
Query: 585 GLCMPDNVRFFPHRGKDTVRHSGIE-KDANITMSWTGRSLITRLDIPSEPGALRGRRSLI 409
G C+ N F+ + VR SG + + N + W RSL+ R D+P ALR
Sbjct: 130 GSCL--NAGFYTRASNEYVRASGWDARLVNSSYRWVERSLVFRPDVPPWQAALR------ 181
Query: 408 XXLTSIGVTGGN 373
L +GVT N
Sbjct: 182 DALLEVGVTPDN 193
>07_03_0766 -
21354494-21354772,21355094-21355247,21355340-21355577,
21355659-21355866,21356148-21356275,21356384-21356521,
21357234-21358080
Length = 663
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Frame = +2
Query: 425 PRKAPGSDGI----SNRVIKL-LPVQLIVMLASFSMPLWRTVSFPRCGKKRTLSG 574
P APG+ G+ +N+++++ LP+ + ++A+ S+ LW R GK +G
Sbjct: 274 PDAAPGTTGVKNNSANKILEIVLPIVAVAIVAAVSILLWNIRKKRRRGKAEHFTG 328
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 332 SEVERRAFLPPSDALPPVTPMEV 400
SEV RR + PP LPP+ PM++
Sbjct: 178 SEVARRYYEPPQVMLPPLAPMQL 200
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 605 DDFLVYRVYVCPITSASFHTAGKI 534
DD +YR Y+CP++ +F T ++
Sbjct: 54 DDGTIYRYYICPLSGTTFTTKSEV 77
>11_04_0144 +
14044973-14044984,14045050-14045183,14045329-14045824,
14046097-14046117,14047504-14047767,14048635-14048715
Length = 335
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 395 EVKXLIKDLRPRKAPGSDGISNRVIK 472
EV LIK ++P KAP DGI+ +K
Sbjct: 226 EVDNLIKVIQPDKAPSPDGINGYFLK 251
>09_02_0374 -
8112021-8112820,8112908-8113152,8113256-8113455,
8113584-8114235,8114369-8114661
Length = 729
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 611 RSDDFLVYRVYVCPITSASFHTAGKI 534
RSDD+L+YR+Y C ++ G I
Sbjct: 89 RSDDYLLYRMYWCSFGPENYGEGGTI 114
>07_03_1564 +
27749899-27750166,27750431-27750507,27750923-27750950,
27751117-27751261,27751351-27751429,27751515-27751633,
27751732-27752073,27754807-27754896,27755730-27755955,
27756398-27756784,27757176-27757496
Length = 693
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 590 YRVYVCPITSASFHTAGKIQFAIAALK 510
YR Y CP + AG IQ+ ++ LK
Sbjct: 528 YRPYTCPYAGSECTVAGDIQYLVSHLK 554
>02_04_0213 + 20974712-20975413
Length = 233
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/81 (27%), Positives = 31/81 (38%)
Frame = +3
Query: 6 RAYDRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTV 185
R D E ++ RD ++ E D W DF + L +L R +
Sbjct: 71 RRVDEEEEEERMDQLWERDRDARAGDEERMDLLWEDFNDELL------LQLRRRQQQRAA 124
Query: 186 VTMPPLVGPSGRLAAFDDDEK 248
PP PS AA DDD++
Sbjct: 125 AGTPPSPSPSPAAAADDDDDE 145
>11_01_0448 -
3469398-3469676,3470015-3470284,3470386-3470476,
3470581-3470690,3470867-3471136,3471768-3471914
Length = 388
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 WSDFLEGLAPSQRSYYRL-ARTLKSDTVVTMPPLVGPS 215
W L+GLA + +YY+ AR K TVV++P GPS
Sbjct: 152 WCQGLDGLASREAAYYQQGARFAKWRTVVSIPN--GPS 187
>05_03_0184 +
9339939-9340896,9341003-9341083,9341166-9341383,
9341796-9342019,9342409-9343096
Length = 722
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 287 PSTQSVDPVHVELVDSEVERRAFLPPSDALPP 382
P T ++DP + V E F+PP LPP
Sbjct: 119 PLTFTIDPSAADFVGQESPVSTFVPPPPPLPP 150
>05_01_0512 -
4259162-4259849,4260209-4260432,4260854-4261071,
4261154-4261234,4261342-4262299
Length = 722
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 287 PSTQSVDPVHVELVDSEVERRAFLPPSDALPP 382
P T ++DP + V E F+PP LPP
Sbjct: 119 PLTITIDPSAADFVGQESPVSTFVPPPPPLPP 150
>03_05_1007 -
29637911-29638333,29640095-29640282,29640688-29640773,
29641108-29641173,29641289-29641331,29641398-29642328
Length = 578
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 492 MSWTGRSLITRLDIP-SEPGA 433
MSW RSL T L+IP +PGA
Sbjct: 1 MSWLARSLATSLNIPEDDPGA 21
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.5 bits (58), Expect = 9.7
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 605 DDFLVYRVYVCPITSASF 552
DD +YR Y+CP++ +F
Sbjct: 21 DDGTIYRYYICPVSGRTF 38
>03_06_0618 - 35132077-35132830,35133690-35135212
Length = 758
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 268 IANPVHAQHSIRGPCSCR 321
+ +P H H RG CSCR
Sbjct: 738 VRDPTHFHHFTRGSCSCR 755
>01_06_1154 -
34955235-34955827,34955912-34956045,34956142-34956389,
34956431-34956901
Length = 481
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 42 IRMRALQRDVKSRITEVRDARWSDFLEGLAPSQRSYYRLARTLK 173
+R++AL + +SR+ + + + DF+ L P R Y R+ +K
Sbjct: 182 LRLKALNGE-RSRLAQSFEYNYGDFIPILRPFLRGYLRICEEVK 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,932,320
Number of Sequences: 37544
Number of extensions: 426157
Number of successful extensions: 1051
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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