Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0324
(647 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U93570-2|AAC51273.1| 1275|Homo sapiens putative p150 protein. 33 0.66
U93567-2|AAC51267.1| 1275|Homo sapiens putative p150 protein. 33 0.66
U93572-2|AAC51276.1| 1275|Homo sapiens putative p150 protein. 32 1.5
U93569-2|AAC51271.1| 1275|Homo sapiens putative p150 protein. 32 1.5
U93565-1|AAC51264.1| 1275|Homo sapiens putative p150 protein. 32 1.5
U93563-1|AAC51261.1| 1275|Homo sapiens putative p150 protein. 32 1.5
U09116-2|AAB60345.1| 1275|Homo sapiens ORF2 protein. 32 1.5
AF421375-1|AAL50637.1| 1275|Homo sapiens unknown protein. 32 1.5
AF194537-1|AAG27485.1| 420|Homo sapiens NAG13 protein. 32 1.5
AF149422-2|AAD38785.1| 1275|Homo sapiens unknown protein. 32 1.5
AF148856-2|AAD39215.1| 1275|Homo sapiens unknown protein. 32 1.5
M80343-2|AAB59368.1| 1275|Homo sapiens protein ( Human transposo... 32 2.0
M80340-1|AAA51622.1| 1275|Homo sapiens ORF2 protein. 32 2.0
M22333-1|AAA88037.1| 1192|Homo sapiens unknown protein protein. 32 2.0
U93574-2|AAC51279.1| 1275|Homo sapiens putative p150 protein. 31 3.5
AK097143-1|BAC04963.1| 372|Homo sapiens protein ( Homo sapiens ... 31 4.7
J04088-1|AAA61209.1| 1531|Homo sapiens TOP2A protein. 30 8.2
AJ011741-1|CAA09762.1| 1531|Homo sapiens topoisomerase II alpha ... 30 8.2
AF071747-1|AAC77388.1| 1531|Homo sapiens topoisomerase II alpha ... 30 8.2
>U93570-2|AAC51273.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 33.5 bits (73), Expect = 0.66
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ +I L +K+PG DG ++ + +L+ L + + P +
Sbjct: 452 PITGSEIVAIINSLPTKKSPGPDGFTDEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYE 511
Query: 560 RTLSGIHKPGK 592
++ I KPG+
Sbjct: 512 ASIILIPKPGR 522
>U93567-2|AAC51267.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 33.5 bits (73), Expect = 0.66
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ +I L +K+PG DG ++ + +L+ L + + P +
Sbjct: 452 PITGSEIVAIINSLPTKKSPGPDGFTDEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYE 511
Query: 560 RTLSGIHKPGK 592
++ I KPG+
Sbjct: 512 ASIILIPKPGR 522
>U93572-2|AAC51276.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 1.5
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ +I L +K+PG DG + + +L+ L + + P +
Sbjct: 452 PITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYE 511
Query: 560 RTLSGIHKPGK 592
++ I KPG+
Sbjct: 512 ASIILIPKPGR 522
>U93569-2|AAC51271.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 1.5
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ +I L +K+PG DG + + +L+ L + + P +
Sbjct: 452 PITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYE 511
Query: 560 RTLSGIHKPGK 592
++ I KPG+
Sbjct: 512 ASIILIPKPGR 522
>U93565-1|AAC51264.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 1.5
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ +I L +K+PG DG + + +L+ L + + P +
Sbjct: 452 PITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYE 511
Query: 560 RTLSGIHKPGK 592
++ I KPG+
Sbjct: 512 ASIILIPKPGR 522
>U93563-1|AAC51261.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 1.5
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ +I L +K+PG DG + + +L+ L + + P +
Sbjct: 452 PITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYE 511
Query: 560 RTLSGIHKPGK 592
++ I KPG+
Sbjct: 512 ASIILIPKPGR 522
>U09116-2|AAB60345.1| 1275|Homo sapiens ORF2 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 1.5
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ +I L +K+PG DG + + +L+ L + + P +
Sbjct: 452 PITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYE 511
Query: 560 RTLSGIHKPGK 592
++ I KPG+
Sbjct: 512 ASIILIPKPGR 522
>AF421375-1|AAL50637.1| 1275|Homo sapiens unknown protein.
Length = 1275
Score = 32.3 bits (70), Expect = 1.5
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ +I L +K+PG DG + + +L+ L + + P +
Sbjct: 452 PITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYE 511
Query: 560 RTLSGIHKPGK 592
++ I KPG+
Sbjct: 512 ASIILIPKPGR 522
>AF194537-1|AAG27485.1| 420|Homo sapiens NAG13 protein.
Length = 420
Score = 32.3 bits (70), Expect = 1.5
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ +I L +K+PG DG + + +L+ L + + P +
Sbjct: 101 PITGAEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYE 160
Query: 560 RTLSGIHKPGK 592
++ I KPG+
Sbjct: 161 ASIILIPKPGR 171
>AF149422-2|AAD38785.1| 1275|Homo sapiens unknown protein.
Length = 1275
Score = 32.3 bits (70), Expect = 1.5
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ +I L +K+PG DG + + +L+ L + + P +
Sbjct: 452 PITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYE 511
Query: 560 RTLSGIHKPGK 592
++ I KPG+
Sbjct: 512 ASIILIPKPGR 522
>AF148856-2|AAD39215.1| 1275|Homo sapiens unknown protein.
Length = 1275
Score = 32.3 bits (70), Expect = 1.5
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ +I L +K+PG DG + + +L+ L + + P +
Sbjct: 452 PITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYE 511
Query: 560 RTLSGIHKPGK 592
++ I KPG+
Sbjct: 512 ASIILIPKPGR 522
>M80343-2|AAB59368.1| 1275|Homo sapiens protein ( Human transposon
L1.2. ).
Length = 1275
Score = 31.9 bits (69), Expect = 2.0
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ +I L +K+PG DG + + +L+ L + + P +
Sbjct: 452 PITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYMEELVPFLLKLFQSIEKEGILPNSFYE 511
Query: 560 RTLSGIHKPGK 592
++ I KPG+
Sbjct: 512 ASIILIPKPGR 522
>M80340-1|AAA51622.1| 1275|Homo sapiens ORF2 protein.
Length = 1275
Score = 31.9 bits (69), Expect = 2.0
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ +I L +K+PG DG + + +L+ L + + P +
Sbjct: 452 PITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYMEELVPFLLKLFQSIEKEGILPNSFYE 511
Query: 560 RTLSGIHKPGK 592
++ I KPG+
Sbjct: 512 ASIILIPKPGR 522
>M22333-1|AAA88037.1| 1192|Homo sapiens unknown protein protein.
Length = 1192
Score = 31.9 bits (69), Expect = 2.0
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ +I L +K+PG DG + + +L+ L + + P +
Sbjct: 369 PITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYMEELVPFLLKLFQSIEKEGILPNSFYE 428
Query: 560 RTLSGIHKPGK 592
++ I KPG+
Sbjct: 429 ASIILIPKPGR 439
>U93574-2|AAC51279.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ +I L +K+PG DG + + +L+ L + P +
Sbjct: 452 PITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSTEKEGILPNSFYE 511
Query: 560 RTLSGIHKPGK 592
++ I KPG+
Sbjct: 512 ASIILIPKPGR 522
>AK097143-1|BAC04963.1| 372|Homo sapiens protein ( Homo sapiens
cDNA FLJ39824 fis, clone SPLEN2011981. ).
Length = 372
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ +I L +K+PG DG + + +L+ L + P +
Sbjct: 24 PITGAEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSTEKEGILPNSFYE 83
Query: 560 RTLSGIHKPGK 592
++ I KPG+
Sbjct: 84 DSIILIPKPGR 94
>J04088-1|AAA61209.1| 1531|Homo sapiens TOP2A protein.
Length = 1531
Score = 29.9 bits (64), Expect = 8.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 329 DSEVERRAFLPPSDALPPVTPMEVKXLIKDLRPRKAPGSD 448
D + + F+P SDA PP T K K+L+P+K+ SD
Sbjct: 1340 DEKTDDEDFVP-SDASPPKTKTSPKLSNKELKPQKSVVSD 1378
>AJ011741-1|CAA09762.1| 1531|Homo sapiens topoisomerase II alpha
protein.
Length = 1531
Score = 29.9 bits (64), Expect = 8.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 329 DSEVERRAFLPPSDALPPVTPMEVKXLIKDLRPRKAPGSD 448
D + + F+P SDA PP T K K+L+P+K+ SD
Sbjct: 1340 DEKTDDEDFVP-SDASPPKTKTSPKLSNKELKPQKSVVSD 1378
>AF071747-1|AAC77388.1| 1531|Homo sapiens topoisomerase II alpha
protein.
Length = 1531
Score = 29.9 bits (64), Expect = 8.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 329 DSEVERRAFLPPSDALPPVTPMEVKXLIKDLRPRKAPGSD 448
D + + F+P SDA PP T K K+L+P+K+ SD
Sbjct: 1340 DEKTDDEDFVP-SDASPPKTKTSPKLSNKELKPQKSVVSD 1378
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,602,893
Number of Sequences: 237096
Number of extensions: 2207464
Number of successful extensions: 4602
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4596
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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