Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0324
(647 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 62 8e-10
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 57 2e-08
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 55 7e-08
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 54 2e-07
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 54 2e-07
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 54 2e-07
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 52 5e-07
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 52 5e-07
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 51 1e-06
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 51 1e-06
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 51 1e-06
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 51 1e-06
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 51 2e-06
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 51 2e-06
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 51 2e-06
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 51 2e-06
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 51 2e-06
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 48 1e-05
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 48 1e-05
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 42 7e-04
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 39 0.005
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 32 0.58
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 31 1.8
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 61.7 bits (143), Expect = 8e-10
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
Frame = +2
Query: 245 KSRVLADTLQTQCTPSTQSVDPVHVELVDS-EVERRAFLPPSDALPPVTPMEVKXLIKDL 421
++ A+ L+T+ T + + E +DS E + LP + P+ E+ IK L
Sbjct: 394 QANCFANHLETRFTHFQFATTEQYQETLDSLETPLQMSLP----IKPIRVEEIVEAIKSL 449
Query: 422 RPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKKRTLSGIHKPGKPKN 601
+K+PG D + N +K LPV+ I+ LA + R FP+ K + IHKPGKP+
Sbjct: 450 PLKKSPGIDNVCNATLKALPVRAILYLALIYNAILRVQFFPKQWKMAAILMIHKPGKPEE 509
Query: 602 HPIELPP 622
P P
Sbjct: 510 SPESYRP 516
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 56.8 bits (131), Expect = 2e-08
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Frame = +2
Query: 245 KSRVLADTLQTQCTPSTQSVDPVHVELVDSEVERRAFLPPSDALPP--VTPMEVKXLIKD 418
K+ V A+ L+ + TP + E + +VE P +LPP VT EVK LI
Sbjct: 197 KTEVFANNLEQRFTPYNYAP-----ESLCRQVEEYLESPFQMSLPPSAVTLEEVKNLIAK 251
Query: 419 LRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKKRTLSGIHKPGK 592
L +KAPG D + NR I+LLP Q + L + FP+ K ++ IHK GK
Sbjct: 252 LPLKKAPGEDLLDNRTIRLLPDQALQFLVLIFNSVLDVGYFPKAWKSASIIMIHKTGK 309
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 55.2 bits (127), Expect = 7e-08
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Frame = +2
Query: 245 KSRVLADTLQTQCTPSTQSVDPVHVELVDSEVERRAFLPPSDALP--PVTPMEVKXLIKD 418
K+ V A+ L+ + TP + E + +VE P +LP VT EVK LI
Sbjct: 395 KTEVFANNLEQRFTPYNYAP-----ESLCRQVEEYLESPFQMSLPLSAVTLEEVKNLIAK 449
Query: 419 LRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKKRTLSGIHKPGK 592
L +KAPG D + NR I+LLP Q + LA + FP+ K ++ IHK GK
Sbjct: 450 LPLKKAPGEDLLDNRTIRLLPDQALQFLALIFNSVLDVGYFPKAWKSASIIMIHKTGK 507
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 54.0 bits (124), Expect = 2e-07
Identities = 31/83 (37%), Positives = 39/83 (46%)
Frame = +2
Query: 374 LPPVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCG 553
+ P P EV +I KAPG D I N +K LP Q I+ + + R FP
Sbjct: 433 ITPFEPCEVAEVIVRQSNNKAPGHDVICNATLKALPRQAILYITLVFNAIVRLQYFPYQW 492
Query: 554 KKRTLSGIHKPGKPKNHPIELPP 622
K +S IHKPGKP+ P P
Sbjct: 493 KLGIISMIHKPGKPEREPASYRP 515
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 53.6 bits (123), Expect = 2e-07
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 1/127 (0%)
Frame = +2
Query: 245 KSRVLADTLQTQCTPSTQSVDPVHVELVDSEVERRAFLPPSDA-LPPVTPMEVKXLIKDL 421
K+ +LAD Q + + + ++ V ++ A P + A + VT EV ++K L
Sbjct: 414 KANILADVFQLKHNLTHSYSNQNTIDQVKISLQSIAETPNNIAEICRVTYPEVFSIVKAL 473
Query: 422 RPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKKRTLSGIHKPGKPKN 601
RK+PG DGI N +K LP I + + + + FPR K + I KPGKP +
Sbjct: 474 HTRKSPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPD 533
Query: 602 HPIELPP 622
+P P
Sbjct: 534 NPESYRP 540
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 53.6 bits (123), Expect = 2e-07
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 1/127 (0%)
Frame = +2
Query: 245 KSRVLADTLQTQCTPSTQSVDPVHVELVDSEVERRAFLPPSDA-LPPVTPMEVKXLIKDL 421
K+ +LAD Q + + + ++ V ++ A P + A + VT EV ++K L
Sbjct: 362 KANILADVFQLKHNLTHSYSNQNTIDQVKISLQSIAETPNNIAEICRVTYPEVFSIVKAL 421
Query: 422 RPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKKRTLSGIHKPGKPKN 601
RK+PG DGI N +K LP I + + + + FPR K + I KPGKP +
Sbjct: 422 HTRKSPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPD 481
Query: 602 HPIELPP 622
+P P
Sbjct: 482 NPESYRP 488
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 52.4 bits (120), Expect = 5e-07
Identities = 29/81 (35%), Positives = 41/81 (50%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ IK+L+ KAPG D I+N++IK LP + + L + R +P K
Sbjct: 480 PITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKH 539
Query: 560 RTLSGIHKPGKPKNHPIELPP 622
+ I KPGK N P P
Sbjct: 540 AQVKMILKPGKSANEPRSYRP 560
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 52.4 bits (120), Expect = 5e-07
Identities = 29/81 (35%), Positives = 41/81 (50%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ IK+L+ KAPG D I+N++IK LP + + L + R +P K
Sbjct: 492 PITLNELNEEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKH 551
Query: 560 RTLSGIHKPGKPKNHPIELPP 622
+ I KPGK N P P
Sbjct: 552 AQVKMILKPGKSSNEPKSYRP 572
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 51.2 bits (117), Expect = 1e-06
Identities = 28/71 (39%), Positives = 39/71 (54%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
PVT E+ LI L +KAPG+D ++N+ I LP + + L + RT FP K
Sbjct: 36 PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKH 95
Query: 560 RTLSGIHKPGK 592
++S I KPGK
Sbjct: 96 ASISMIPKPGK 106
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 51.2 bits (117), Expect = 1e-06
Identities = 28/71 (39%), Positives = 39/71 (54%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
PVT E+ LI L +KAPG+D ++N+ I LP + + L + RT FP K
Sbjct: 483 PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKH 542
Query: 560 RTLSGIHKPGK 592
++S I KPGK
Sbjct: 543 ASISMIPKPGK 553
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 51.2 bits (117), Expect = 1e-06
Identities = 28/71 (39%), Positives = 39/71 (54%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
PVT E+ LI L +KAPG+D ++N+ I LP + + L + RT FP K
Sbjct: 483 PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKH 542
Query: 560 RTLSGIHKPGK 592
++S I KPGK
Sbjct: 543 ASISMIPKPGK 553
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 51.2 bits (117), Expect = 1e-06
Identities = 28/71 (39%), Positives = 39/71 (54%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
PVT E+ LI L +KAPG+D ++N+ I LP + + L + RT FP K
Sbjct: 483 PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKH 542
Query: 560 RTLSGIHKPGK 592
++S I KPGK
Sbjct: 543 ASISMIPKPGK 553
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 50.8 bits (116), Expect = 2e-06
Identities = 29/81 (35%), Positives = 41/81 (50%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ IK+L+ KAPG D I+N++IK LP + + L + R +P K
Sbjct: 364 PITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKH 423
Query: 560 RTLSGIHKPGKPKNHPIELPP 622
+ I KPGK N P P
Sbjct: 424 AQVKMILKPGKSVNDPKSYRP 444
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 50.8 bits (116), Expect = 2e-06
Identities = 29/81 (35%), Positives = 41/81 (50%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ IK+L+ KAPG D I+N++IK LP + + L + R +P K
Sbjct: 480 PITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKH 539
Query: 560 RTLSGIHKPGKPKNHPIELPP 622
+ I KPGK N P P
Sbjct: 540 AQVKMILKPGKSVNDPKSYRP 560
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 50.8 bits (116), Expect = 2e-06
Identities = 29/81 (35%), Positives = 41/81 (50%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ IK+L+ KAPG D I+N++IK LP + + L + R +P K
Sbjct: 480 PITLKELNDEIKNLKNSKAPGKDLITNQLIKALPTKATLYLILIYNSILRIGYYPDAWKH 539
Query: 560 RTLSGIHKPGKPKNHPIELPP 622
+ I KPGK N P P
Sbjct: 540 AQVKMILKPGKSVNDPKSYRP 560
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 50.8 bits (116), Expect = 2e-06
Identities = 29/81 (35%), Positives = 41/81 (50%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ IK+L+ KAPG D I+N++IK LP + + L + R +P K
Sbjct: 442 PITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKH 501
Query: 560 RTLSGIHKPGKPKNHPIELPP 622
+ I KPGK N P P
Sbjct: 502 AQVKMILKPGKSVNDPKSYRP 522
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 50.8 bits (116), Expect = 2e-06
Identities = 29/81 (35%), Positives = 41/81 (50%)
Frame = +2
Query: 380 PVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKK 559
P+T E+ IK+L+ KAPG D I+N++IK LP + + L + R +P K
Sbjct: 480 PITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKH 539
Query: 560 RTLSGIHKPGKPKNHPIELPP 622
+ I KPGK N P P
Sbjct: 540 AQVKMILKPGKSVNDPKSYRP 560
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 48.0 bits (109), Expect = 1e-05
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +2
Query: 389 PMEVKXLIKD-LRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKKRT 565
P E+ +IK+ L PRK+PG D I+ R++ LP I+ + + + FP+ KK T
Sbjct: 433 PCELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFPQKWKKST 492
Query: 566 LSGIHKPGKPKNHPIELPPD*PSSCL 643
+ I KPGK K P P +CL
Sbjct: 493 IVMIPKPGKDKTQPSSYRPISLLTCL 518
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 48.0 bits (109), Expect = 1e-05
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +2
Query: 389 PMEVKXLIKD-LRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKKRT 565
P E+ +IK+ L PRK+PG D I+ R++ LP I+ + + + FP+ KK T
Sbjct: 433 PCELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFPQKWKKST 492
Query: 566 LSGIHKPGKPKNHPIELPPD*PSSCL 643
+ I KPGK K P P +CL
Sbjct: 493 IVMIPKPGKDKTQPSSYRPISLLTCL 518
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 41.9 bits (94), Expect = 7e-04
Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +2
Query: 359 PPSDALPPVTPMEVKXLIKDLRPRKAPGSDGISNRVIK-LLPVQLIVMLASFSMPLWRTV 535
PP+ P +T EV K +RP KAPG DGI ++K + V +F L V
Sbjct: 394 PPASDFPCITSCEVVEAAKRIRPNKAPGIDGIPGVIVKAAATARPEVFRDTFQQCLLDGV 453
Query: 536 SFPRCGKKRTLSGIHKPGKPKNHPIELPP 622
FP+ KK L + K P N P P
Sbjct: 454 -FPKRWKKMKLVLLLKGKGPANVPRSYRP 481
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 39.1 bits (87), Expect = 0.005
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 389 PMEVKXLIKD-LRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKKRT 565
P E+ +IKD L P+K+PG D I+ +I LP + + + + FP+ K
Sbjct: 435 PKEITKIIKDNLSPKKSPGYDLITPEMIIQLPHSAVRYITKLFNAITKLGYFPQRWKMMK 494
Query: 566 LSGIHKPGKPKNHPI 610
+ I KPG KNH +
Sbjct: 495 IIMIPKPG--KNHTV 507
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 32.3 bits (70), Expect = 0.58
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +2
Query: 365 SDALPPVTPM-EVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSF 541
++ +PP + EV + L+ R++PG DGI+ + K + + LAS R F
Sbjct: 427 AEEVPPALEVFEVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYF 486
Query: 542 PRCGK-KRTLSGIHKPGKPKNHP 607
P K R +S + P K K P
Sbjct: 487 PAEWKCPRVVSLLKGPDKDKCEP 509
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 30.7 bits (66), Expect = 1.8
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +2
Query: 431 KAPGSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKKRTLSGIHKPGKPKNHPI 610
K+PG+D +S ++K L L L + T +P + + I KP KP +
Sbjct: 452 KSPGADRVSYPMLKNLSPHLKTKLLDIFNQILTTGKYPHTWRSAIIIPISKPNKPPSDIN 511
Query: 611 ELPPD*PSSCL 643
P SCL
Sbjct: 512 SYRPISLLSCL 522
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,721,021
Number of Sequences: 53049
Number of extensions: 681343
Number of successful extensions: 1922
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1915
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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