Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0324
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    32   0.30 
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    32   0.30 
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AC006649-3|AAF39863.2|  260|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = +2

Query: 296 QSVDPVHVELVDSEVE--RRAFLPPSDALPPVTPMEVKXLIKDLRPRKAPGSDGISNRVI 469
           Q ++  + EL  S V   + + +P +   PP  P E++ +++     KA G D IS   +
Sbjct: 516 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 575

Query: 470 KLLPVQLIVMLASFSMPLWRTVSFPRCGKKRTLSGIHKPGKPKN 601
           K     +I ++         + + P+  K    + I K G  +N
Sbjct: 576 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN 619


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = +2

Query: 296 QSVDPVHVELVDSEVE--RRAFLPPSDALPPVTPMEVKXLIKDLRPRKAPGSDGISNRVI 469
           Q ++  + EL  S V   + + +P +   PP  P E++ +++     KA G D IS   +
Sbjct: 255 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 314

Query: 470 KLLPVQLIVMLASFSMPLWRTVSFPRCGKKRTLSGIHKPGKPKN 601
           K     +I ++         + + P+  K    + I K G  +N
Sbjct: 315 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN 358


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
 Frame = +2

Query: 296 QSVDPVHVELVDSEVE--RRAFLPPSDALPPVTPMEVKXLIKDLRPRKAPGSDGISNRVI 469
           Q ++  + E   S V   + + +P +   PP  P +++  ++     KA G D IS   +
Sbjct: 345 QEIEKFYTEFFKSAVSNSQASSIPTTATPPPFLPEKIRYALRSFPNGKAAGQDKISADFL 404

Query: 470 KLLPVQLIVMLASFSMPLWRTVSFPRCGKKRTLSGIHKPGKPKN 601
           K     +I ++         + + P+  K    + I K G  +N
Sbjct: 405 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN 448


>AC006649-3|AAF39863.2|  260|Caenorhabditis elegans Hypothetical
           protein H01M10.2 protein.
          Length = 260

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 464 VIKLLPVQLIVMLASFSMPLWRTVSFPRCG 553
           +IK  PV  I +  SFS P+  T  FP CG
Sbjct: 102 LIKEKPVDNIALNISFSPPVHWTFCFPSCG 131


>Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical
           protein C04H5.3 protein.
          Length = 1034

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 290 STQSVDPVHVELVDSEVERRAFLPPSDALPPVTP 391
           S   +DPV +ELV S+V  + +  PS  LP   P
Sbjct: 377 SKNCMDPVCIELVVSDVVTKFWSSPSGKLPDSEP 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,242,067
Number of Sequences: 27780
Number of extensions: 328956
Number of successful extensions: 743
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)