Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0324
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43880.1 68418.m05366 expressed protein 31 0.66
At5g11430.1 68418.m01335 transcription elongation factor-related... 30 1.2
At3g14620.1 68416.m01851 cytochrome P450, putative similar to GB... 29 2.0
At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putati... 29 3.5
At3g14350.3 68416.m01816 leucine-rich repeat transmembrane prote... 29 3.5
At3g14350.2 68416.m01814 leucine-rich repeat transmembrane prote... 29 3.5
At3g14350.1 68416.m01815 leucine-rich repeat transmembrane prote... 29 3.5
At5g12400.1 68418.m01458 PHD finger transcription factor, putati... 28 4.7
At3g43210.1 68416.m04561 kinesin motor family protein (NACK2) co... 28 4.7
At2g21330.1 68415.m02538 fructose-bisphosphate aldolase, putativ... 28 4.7
At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains... 28 6.1
At5g06640.1 68418.m00750 proline-rich extensin-like family prote... 28 6.1
At5g24460.1 68418.m02883 expressed protein 27 8.1
>At5g43880.1 68418.m05366 expressed protein
Length = 836
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 141 RSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAECW 260
RS L R +KS+ + PP +G GR +FDD A C+
Sbjct: 606 RSSSSLEREMKSNLLGKSPP-IGSIGRTLSFDDSTVARCY 644
>At5g11430.1 68418.m01335 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 871
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 203 RRPLRPTRGVR**RKSRVL-ADTLQTQCTP-STQSVDPVHVELVDSEVERRAFLPP 364
RRP + V+ K AD +++ TP ST+ +DP+ +D E++ FLPP
Sbjct: 387 RRPRAKSHSVKTALKDEAAKADNEKSRSTPPSTEEIDPMQGLGIDDELKDVEFLPP 442
>At3g14620.1 68416.m01851 cytochrome P450, putative similar to
GB:Q05047 from [Catharanthus roseus]
Length = 515
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 18 RYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAP 134
R+ +N +RMR + ++VKSR+ E+ R G AP
Sbjct: 252 RFLPTKNNLRMRQINKEVKSRLREIIMKRQRGMDTGEAP 290
>At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putative
/ NADPH-ferrihemoprotein reductase, putative similar to
NADPH-ferrihemoprotein reductase NADPH-cytochrome P450
oxydoreductase isoform 1 [Populus balsamifera subsp.
trichocarpa x Populus deltoides] GI:13183562, SP|P37116
NADPH-cytochrome P450 reductase (EC 1.6.2.4) (CPR)
[Vigna radiata] {Phaseolus aureus}
Length = 692
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +2
Query: 440 GSDGISNRVIKLLPVQLIVMLASFSMPLWRTVSFPRCGKKRTL 568
G+D +S+ V+ ++ + ++A F + LW+ + R G+ + L
Sbjct: 19 GTDSLSDDVVLVIATTSLALVAGFVVLLWKKTTADRSGELKPL 61
>At3g14350.3 68416.m01816 leucine-rich repeat transmembrane protein
kinase, putative similar to leucine-rich repeat
transmembrane protein kinase 1 GB:AAC27894 from [Zea
mays]
Length = 689
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 156 LARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAECWPIHCKPSA 284
L T K DT ++M PS R +FDDD+ PI K +A
Sbjct: 355 LVETKKLDTSLSMNLRPPPSERHKSFDDDDSTMRKPIVAKKAA 397
>At3g14350.2 68416.m01814 leucine-rich repeat transmembrane protein
kinase, putative similar to leucine-rich repeat
transmembrane protein kinase 1 GB:AAC27894 from [Zea
mays]
Length = 680
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 156 LARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAECWPIHCKPSA 284
L T K DT ++M PS R +FDDD+ PI K +A
Sbjct: 318 LVETKKLDTSLSMNLRPPPSERHKSFDDDDSTMRKPIVAKKAA 360
>At3g14350.1 68416.m01815 leucine-rich repeat transmembrane protein
kinase, putative similar to leucine-rich repeat
transmembrane protein kinase 1 GB:AAC27894 from [Zea
mays]
Length = 717
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 156 LARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAECWPIHCKPSA 284
L T K DT ++M PS R +FDDD+ PI K +A
Sbjct: 355 LVETKKLDTSLSMNLRPPPSERHKSFDDDDSTMRKPIVAKKAA 397
>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
similarity to predicted proteins, Arabidopsis thaliana
Length = 1595
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 284 TPSTQSVDPVHVELVDSEVERRAFLPPSDALPPVTPM 394
+PS S+ +VD + + + LPP LPP +P+
Sbjct: 371 SPSISSLTEEKTWIVDGKADNISALPPKPQLPPSSPI 407
>At3g43210.1 68416.m04561 kinesin motor family protein (NACK2)
contains Pfam profile: PF00225 kinesin motor domain
Length = 938
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 214 QADSRRSMMTKKQSAGRYIANPVHAQHSIRGPCS 315
Q R+ + KK+ ++N + QH IRGPCS
Sbjct: 596 QTPDFRTQVKKKRLLPFGLSNSPNLQHMIRGPCS 629
>At2g21330.1 68415.m02538 fructose-bisphosphate aldolase, putative
strong similarity to plastidic fructose-bisphosphate
aldolase (EC 4.1.2.13) from Nicotiana paniculata
(NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057
[SP|Q40677]
Length = 399
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 96 DARWSDFLEGLAPSQRSYYRL-ARTLKSDTVVTMPPLVGPS 215
D W L+GLA +YY+ AR K TVV++P GPS
Sbjct: 160 DESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIPN--GPS 198
>At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains
Pfam profile: PF02362 B3 DNA binding domain; identical
to cDNA auxin response factor 4 (ARF4) GI:4102597
Length = 788
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 500 LASFSMPLWRTVSFPRCGKKRTLSGIHKPGKPKNHPIEL 616
L FS+P+ S P+ KR + +HK G I+L
Sbjct: 645 LFGFSLPVETPASKPQSSSKRICTKVHKQGSQVGRAIDL 683
>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 689
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 354 SCHPLMRYHPSPRWKLKX*SKTYVLARLPVPTVYPTALLNF 476
S HP Y PSP+ K YV + P P P+ +N+
Sbjct: 535 SSHPPPYYSPSPKVNYKSPPPPYVYSSPPPPYYSPSPKVNY 575
>At5g24460.1 68418.m02883 expressed protein
Length = 300
Score = 27.5 bits (58), Expect = 8.1
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +2
Query: 353 FLPPSDALPPVTPMEVKXLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLAS----FSMP 520
F+ PS PP TP+ + I + RPR A + + + I L V L+ + +S S+P
Sbjct: 2 FVGPS---PPHTPLVNRRNINNHRPRNATVTSALPD--IFLAAVSLLFLWSSPKPLVSLP 56
Query: 521 LWRTVSFPRCGKKRTLSGIHKPGKPKNHPIE 613
R SFP ++R+++ + + P P +
Sbjct: 57 PNR-FSFPLNPRRRSITAMSRRSPPPPPPTQ 86
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,511,057
Number of Sequences: 28952
Number of extensions: 312303
Number of successful extensions: 924
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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